Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1450 ATGCAATCTTCGAGCCATAGACTTCCCCAACCTTCAGCTTCCGAGGAAGAGGAGGATTCCATTAACTACACTGAAAACAAGCCCTCCAATTTCTTCGATGTTTATGGGCCTCAAGGAAAGGCTGAAGTTGTTTTCAAGAATCCAGAAGCTAATTCAACTTTGAATTTGCAAGACGTTCAAGGGCTTGTAACTTGGGTACTGGCTGATGGGTTCATGCCATCATGGGTTTTTATCAAGAACAAGCCCCTCATACGGAAAGTGGTTATGGTTTATGTACCTGGATTGGATGCAGCTTTGTACTTATCACAGTCAAAAATACTTCGTAGCTACAAAGAGTGTTGTGGCAATCCAAAGGCAGTTCTAGGTCTTAGCTGTATAGCAGATGGAATGCAGACAATTGATGCACTCCTAACATGTAGAGTAAAAAGAAAAAGGGAAGAAAGTAGTTCAGTCATAACAAAATCTAATCGGACATCTGAACAAGAAAGATCTGCTGCTGAGAAAGATTCAACCACGGTGGAGCAGATGAAAAATCCACCTTTTCCCATCACATATTACACACTGACTCCTAAACAGTTGGAAGACAATGGGTATTCTCTCAATCAGCCAGGTTTCGTCTCTACGTTTCCCGCTCCTTTGGGAGTTTCACCCCATGAAATATTGGCACTTGATTGCGAGATGTGTGTGACAAATGAGGGTTTCGAGCTCACAAGAGTGACCTTGGTGGATACCAAAGGGCAGATTTTGCTAGATAAATTGGTCAAGCCATCAAATGCTATTGTTGATTACAACACCAGGTATAGTGGAATTACATGTGAAATGTTAAGTGAAGTGACCACAAGTCTTAAAGACATTCAGGAAGAATTTTTTAAACTGGTTTACAAAGAGACTATTCTGGTCGGGCATTCCCTAGAAAATGATCTGTTAGCATTGAAGATATCTCATAATCTAGTGATAGACACTGCAGTCCTGTACAAGCATCCCCGTGGTGGATCCCACAAAACCGCTCTTCGAATTCTTGTTAGAAAATTTCTTTCCAGAGAGATACAGCAGTCAGAAAATGGCCACGACAGTACTGAAGACGCAAGAGCTACCATGGACCTGGCTCTTCTAAAATTTAGACATGGACCTGATTTTGGAACACCTCCATCCTTGATGCGGAAGAAACTGCTTACTATTCTCAGTGAGAGTGGAAAGACCTCCTCGTTCATTGATGATATTTCCATAGTAAAGCGATATTCATCTGAATCATCAAATGCATTTCCTGTGCCGTCTGATGATGAAGCTCTTACAAAAGCAAAAAAAGAGGTGAAGAACGAGCGGGTACAATTTGTCTGGACGCAACTTTCAGAACTGAATTCTTATTATAGGAAACAAGCACTTGATCAAGAGAAAGTAAATGCAAAAGTTGCAGAGATGATGTCATTGCTTACATGTGATCAGAGGTCGGTCAAGAAAAAAGGGAAAAATTGCAAAATGGGAACTGAACTACGGGAAATTCTGGTTCGGATGAATGCTAGAATCCATGCCCTCTACTCCACATTGCCCACTAATGCCATGCTTATAATTTGCACTGGACACGGTGACACTGCAATTGTGCATAGGTTGAGGAGAATGCTTAAAGAGGAGAATGATTCAAGCTTTTGCCGTGAGAAGGTTGTAAAGGTCTTGGAAGAGGTTCAGGCCCAAGCCGAGGTGGCTTTGTGTTTTGTTGGCATAAAGCAGTAA 1728 41.72 MQSSSHRLPQPSASEEEEDSINYTENKPSNFFDVYGPQGKAEVVFKNPEANSTLNLQDVQGLVTWVLADGFMPSWVFIKNKPLIRKVVMVYVPGLDAALYLSQSKILRSYKECCGNPKAVLGLSCIADGMQTIDALLTCRVKRKREESSSVITKSNRTSEQERSAAEKDSTTVEQMKNPPFPITYYTLTPKQLEDNGYSLNQPGFVSTFPAPLGVSPHEILALDCEMCVTNEGFELTRVTLVDTKGQILLDKLVKPSNAIVDYNTRYSGITCEMLSEVTTSLKDIQEEFFKLVYKETILVGHSLENDLLALKISHNLVIDTAVLYKHPRGGSHKTALRILVRKFLSREIQQSENGHDSTEDARATMDLALLKFRHGPDFGTPPSLMRKKLLTILSESGKTSSFIDDISIVKRYSSESSNAFPVPSDDEALTKAKKEVKNERVQFVWTQLSELNSYYRKQALDQEKVNAKVAEMMSLLTCDQRSVKKKGKNCKMGTELREILVRMNARIHALYSTLPTNAMLIICTGHGDTAIVHRLRRMLKEENDSSFCREKVVKVLEEVQAQAEVALCFVGIKQ 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11503041 11507498 - Conep04aG0150200.1 Cone4ag1450 436428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1450 575 Pfam Exonuclease 222 368 IPR013520 -
Cone4ag1450 575 SUPERFAMILY Ribonuclease H-like 220 374 IPR012337 -
Cone4ag1450 575 Gene3D - 216 377 IPR036397 GO:0003676(InterPro)
Cone4ag1450 575 MobiDBLite consensus disorder prediction 149 173 - -
Cone4ag1450 575 MobiDBLite consensus disorder prediction 1 22 - -
Cone4ag1450 575 FunFam RNA exonuclease NEF-sp 216 380 - -
Cone4ag1450 575 CDD REX1_like 221 370 IPR034922 -
Cone4ag1450 575 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 27 572 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Cone4ag1450 575 SMART exoiiiendus 219 378 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1450 K14570 - - rcu:8270416 818.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1450 Cone-Chr4:11503041 Cone7ag1482 Cone-Chr7:10400406 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1196 . Blo12g01111 . . . . Bma04g00026 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1450 Cone7ag1482 . . . . . . . . . . . . . . . . . . . . Car09g00971 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009337 0 1 1 1 0 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 2 1 1 1 2 1 34