Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1451 ATGTCGCGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTGCGTCTGAAGAAGCATGGAAATCGTTTCGAGATTGCCTGCTATAAGAACAAGGTTCTTTCATGGCGCTCTGGCGTAGAGAAAGATTTGGATGAAGTCTTGCAGTCACAAACTGTTTACTCAAATGTTTCGAAAGGGGTACTTGCCAAATCAAAAGATTTAGTGGCAGCCTTTGGAACTGATGATCAGACAAAAATTTGCTTGGAGATTTTGGATAAAGGTGAGCTTCAAGTTGCTGGAAAGGAGAGGGAATCGCAGTTATCCAGTCAGTTTCGGGATATTGCAACCATTGTCATGCAGAAGACCTTCAATCCTGAAACTCAACGCCCATACACTATAAGCATGATCGAGCGGCTTATGCATGAAATTCACTTTGCTGTTGATCCACATGGTAGCTCAAAGAAGCAGGCACTTGAGGTTATTCAAGAGCTTCAGAAGCATTTCCCTATTAAACGTTCACCGATGCGTATACTATTTAGAGTCTCTGACCAGAACATCTCATCTCTTCTTGAGCAGATGAATGTCTGGAATGCCAAGATTATTTCAAATGAGCCATCTGGGAGTCAGCCGTGCATTATTTGTGAGGTGGATCCTAGCTTTTACAGAGAGTGTAATCCCTTGATGAGTGATCTGAACGGCAGGTTTGAGGTACTTTCATTTTCATTACATGAGGAAGGGGACACTATTGTGGATCGCTATGAAGATCATGAGCATGTTCCAAGAAAGAATGTGAAGGAGGAATCAAGTGATGCCGTGTCCCGGTTAAGTGAAAAATTAGAAAAGCAGAGCATCTTGCTTAGTGCTACTACTTCGGAGAGCCCTGGGCAAAGCATCACAACGGGTCGTGTTGGGAACAGTCAAGGTGGCAGAAAGCATTGCACCACCTGTCATGTAGTATTGGGGGATGACCCGCTTCTGTTTAGGGAGCATCACAAGAGTGAATGGCACAAGCATAACGTGAATCGCAAAACCAGAAAACTCCCTCCCTTGAACGAAGAAGAGTGCAAGGTAGAAATAGAATTGGGCGACTCAAATTCAGATTTGAAGGATTACTCTTTCTAG 1119 44.77 MSRTLVQPIGQKRLTNVAVVRLKKHGNRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLAKSKDLVAAFGTDDQTKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTFNPETQRPYTISMIERLMHEIHFAVDPHGSSKKQALEVIQELQKHFPIKRSPMRILFRVSDQNISSLLEQMNVWNAKIISNEPSGSQPCIICEVDPSFYRECNPLMSDLNGRFEVLSFSLHEEGDTIVDRYEDHEHVPRKNVKEESSDAVSRLSEKLEKQSILLSATTSESPGQSITTGRVGNSQGGRKHCTTCHVVLGDDPLLFREHHKSEWHKHNVNRKTRKLPPLNEEECKVEIELGDSNSDLKDYSF 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11509372 11511686 + Conep04aG0150300.1 Cone4ag1451 436429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1451 372 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 246 IPR039100 -
Cone4ag1451 372 SMART ZnF_U1_5 307 342 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone4ag1451 372 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254(InterPro)
Cone4ag1451 372 Gene3D - 1 96 IPR036786 -
Cone4ag1451 372 FunFam SBDS, ribosome maturation factor 100 172 - -
Cone4ag1451 372 NCBIfam ribosome assembly factor SBDS 13 228 IPR002140 GO:0042256(InterPro)
Cone4ag1451 372 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Cone4ag1451 372 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Cone4ag1451 372 Gene3D - 174 250 - -
Cone4ag1451 372 MobiDBLite consensus disorder prediction 286 309 - -
Cone4ag1451 372 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Cone4ag1451 372 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Cone4ag1451 372 FunFam SBDS, ribosome maturation factor 3 96 - -
Cone4ag1451 372 Gene3D - 100 172 IPR037188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1451 Cone-Chr4:11509372 Cone7ag1481 Cone-Chr7:10397910 2.48E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1451 K14574 - csv:101215380 513.072