Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1451 | ATGTCGCGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTGCGTCTGAAGAAGCATGGAAATCGTTTCGAGATTGCCTGCTATAAGAACAAGGTTCTTTCATGGCGCTCTGGCGTAGAGAAAGATTTGGATGAAGTCTTGCAGTCACAAACTGTTTACTCAAATGTTTCGAAAGGGGTACTTGCCAAATCAAAAGATTTAGTGGCAGCCTTTGGAACTGATGATCAGACAAAAATTTGCTTGGAGATTTTGGATAAAGGTGAGCTTCAAGTTGCTGGAAAGGAGAGGGAATCGCAGTTATCCAGTCAGTTTCGGGATATTGCAACCATTGTCATGCAGAAGACCTTCAATCCTGAAACTCAACGCCCATACACTATAAGCATGATCGAGCGGCTTATGCATGAAATTCACTTTGCTGTTGATCCACATGGTAGCTCAAAGAAGCAGGCACTTGAGGTTATTCAAGAGCTTCAGAAGCATTTCCCTATTAAACGTTCACCGATGCGTATACTATTTAGAGTCTCTGACCAGAACATCTCATCTCTTCTTGAGCAGATGAATGTCTGGAATGCCAAGATTATTTCAAATGAGCCATCTGGGAGTCAGCCGTGCATTATTTGTGAGGTGGATCCTAGCTTTTACAGAGAGTGTAATCCCTTGATGAGTGATCTGAACGGCAGGTTTGAGGTACTTTCATTTTCATTACATGAGGAAGGGGACACTATTGTGGATCGCTATGAAGATCATGAGCATGTTCCAAGAAAGAATGTGAAGGAGGAATCAAGTGATGCCGTGTCCCGGTTAAGTGAAAAATTAGAAAAGCAGAGCATCTTGCTTAGTGCTACTACTTCGGAGAGCCCTGGGCAAAGCATCACAACGGGTCGTGTTGGGAACAGTCAAGGTGGCAGAAAGCATTGCACCACCTGTCATGTAGTATTGGGGGATGACCCGCTTCTGTTTAGGGAGCATCACAAGAGTGAATGGCACAAGCATAACGTGAATCGCAAAACCAGAAAACTCCCTCCCTTGAACGAAGAAGAGTGCAAGGTAGAAATAGAATTGGGCGACTCAAATTCAGATTTGAAGGATTACTCTTTCTAG | 1119 | 44.77 | MSRTLVQPIGQKRLTNVAVVRLKKHGNRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLAKSKDLVAAFGTDDQTKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTFNPETQRPYTISMIERLMHEIHFAVDPHGSSKKQALEVIQELQKHFPIKRSPMRILFRVSDQNISSLLEQMNVWNAKIISNEPSGSQPCIICEVDPSFYRECNPLMSDLNGRFEVLSFSLHEEGDTIVDRYEDHEHVPRKNVKEESSDAVSRLSEKLEKQSILLSATTSESPGQSITTGRVGNSQGGRKHCTTCHVVLGDDPLLFREHHKSEWHKHNVNRKTRKLPPLNEEECKVEIELGDSNSDLKDYSF | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11509372 | 11511686 | + | Conep04aG0150300.1 | Cone4ag1451 | 436429 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1451 | 372 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 246 | IPR039100 | - | |
Cone4ag1451 | 372 | SMART | ZnF_U1_5 | 307 | 342 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cone4ag1451 | 372 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254(InterPro) | |
Cone4ag1451 | 372 | Gene3D | - | 1 | 96 | IPR036786 | - | |
Cone4ag1451 | 372 | FunFam | SBDS, ribosome maturation factor | 100 | 172 | - | - | |
Cone4ag1451 | 372 | NCBIfam | ribosome assembly factor SBDS | 13 | 228 | IPR002140 | GO:0042256(InterPro) | |
Cone4ag1451 | 372 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
Cone4ag1451 | 372 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - | |
Cone4ag1451 | 372 | Gene3D | - | 174 | 250 | - | - | |
Cone4ag1451 | 372 | MobiDBLite | consensus disorder prediction | 286 | 309 | - | - | |
Cone4ag1451 | 372 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - | |
Cone4ag1451 | 372 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - | |
Cone4ag1451 | 372 | FunFam | SBDS, ribosome maturation factor | 3 | 96 | - | - | |
Cone4ag1451 | 372 | Gene3D | - | 100 | 172 | IPR037188 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag1451 | Cone-Chr4:11509372 | Cone7ag1481 | Cone-Chr7:10397910 | 2.48E-252 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1451 | K14574 | - | csv:101215380 | 513.072 |