Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1461 | ATGGCGACGGCGATTCAGTCACCAATGGCTCAGGCTAACGCACCGGCGGCGGTGATGAATCAACCACCAGCAGTGGTGACCGGAGGATTTGGGAATGCATCGCTGTACGTGGGAGATTTGGACAAGAATGTGAATGAGGAACAACTCCTCGAACTGTTTGGCCAGGTCGGAACGGTGGCCTCTGTTAGGGTTTGTAGGGATCAGTCCCGCGGGCAATCACTTGGCTATGCCTACGTCAATTATGCGAGCCCTCAGGAAGCTTCCAATGCCATGGAGATGTTGAATTTCACTTCTGTTAATGGGAAGCCGATCAGGATTATGTTTTCTTATCGAGATCCCAGCCTTCGGAAAAGTGGATATGCCAATGTTTTTGTCAAGAACCTAGACACCTCAATTGATAACAAGGCATTGCATGATTCTTTTTCCGTCTTTGGAACTATCCTTTCATGTAAGGTAGCTGTTGATAGGAATGGTCAATCAAAAGGGTATGGGTTTGTGCAATTTGCAATCGAAGAATCTGCACAGAATGCCATTAAACGGTTGAATGGAATGCTGTTAAATGACAAGCAAGTTTACGTTGGACTTTTTGTTAGGCGTCAGGAAAGGAATGAAGCAAATGGATCGCCTAGATTTTTTAATGTTTATGTCAAGAATTTACCTGAAGAAACTACGGATGAGGACCTTAAGATGCTATTTGGATCTTATGGTACTATTACTAGCGCTGTTGTTATGCGGGACCCGGATGGGAAATCTCGACATTTCGGGTTTGTGAACTTTGAGGATTCAGAGGCGGCCGCTGCTGCAGTTGAGAAGTTGAATGGGACCACAATTGGCGAGGAAAATGTTCTGTATGTTGGTAGGGCCCAGAAGAAAGGGGAGAGAGAGGCAGAGTTGAGATCCAAATTTGAACAGGAAAGGATCAGTAGATATGAAAAGTTACAAGGTGCTAATTTATACATTAAGAATCTGGAAGATAACGTTACTGATGAGAATCTGAAGGAACTGTTTTCTGAGTTTGGAACAATCACATCATGCAAGGTCATGTTTGATCAACATGGGCACACCAAGGGCTGTGGTTTTGTGGCCTTCTCTTCACCAGAAGAAGCAACAAGAGCTCTGAATAGCATGAATAATAAGATGGTGGGGCAGAAACCTTTATATGTTGCTGTTGCCCAGCGCAGAGAAGAGAGAAAAGCTCGCCTGCTGGCACAGTTTTCCCAACTCAGAGCACCTGGTGTGATCCCGCCCTTCCCTTCTGGGGTCCACGGATTTCACCCTGGTACACCTAGAGTTGGCCCTCAACAACTCTTTTATGGTCAAGGAGCAGCTGGCCTTATGCCCCCTCAGCCTGCTGGTTTTGGCTTCCAACCCGGACTCCTTCCCGGAATGCGGCCTGGTGTTGCCCCAAATTTTATAATGCCTTATCAGCTTCAGAGGCAAGGTCAGCACGGGCAGCGCATGACCATTAGGCGAGGTGGCAACCACCCTCAGCACATGCATCAGCAACAGTTTCGGCAACACAACTCAGGTCAAGGCTTAAGGTACATGGGCAACCCAAGGAACAGTCTTGACCAATCAGCTGTTCCACAAGGTGTGATTGGCCCAGTGCTGCCTTCTTTGGGCTATTCCGGGCCCAGAATTCCTACCTCCCCTACTGACATCCAACAATCCCGGCCCTTGCCTGCATCTACCCTGGCCTCTGCATTAGCTTCCGCCACTCCAGAGGACCAGCGCGTGATGCTAGGAGAGCAACTATATCCCCTTGTGGCCCGTGTTGAGCTGAGCAATGCTGCAAAAGTGACGGGGATGTTGCTCGAGATGGATCAACCTGAGGTTCTTCATCTCATAGAATCTCCAGATGCTCTGAAGATTAAGGTGGCTGAGGCGATGGAAGTGCTTAAGAAAGCTGCTGGTGCCGAATCAGAGGTTTCCAATCAGCTCGGTTCATTGGCACTTGATGAGTGA | 1965 | 48.3 | MATAIQSPMAQANAPAAVMNQPPAVVTGGFGNASLYVGDLDKNVNEEQLLELFGQVGTVASVRVCRDQSRGQSLGYAYVNYASPQEASNAMEMLNFTSVNGKPIRIMFSYRDPSLRKSGYANVFVKNLDTSIDNKALHDSFSVFGTILSCKVAVDRNGQSKGYGFVQFAIEESAQNAIKRLNGMLLNDKQVYVGLFVRRQERNEANGSPRFFNVYVKNLPEETTDEDLKMLFGSYGTITSAVVMRDPDGKSRHFGFVNFEDSEAAAAAVEKLNGTTIGEENVLYVGRAQKKGEREAELRSKFEQERISRYEKLQGANLYIKNLEDNVTDENLKELFSEFGTITSCKVMFDQHGHTKGCGFVAFSSPEEATRALNSMNNKMVGQKPLYVAVAQRREERKARLLAQFSQLRAPGVIPPFPSGVHGFHPGTPRVGPQQLFYGQGAAGLMPPQPAGFGFQPGLLPGMRPGVAPNFIMPYQLQRQGQHGQRMTIRRGGNHPQHMHQQQFRQHNSGQGLRYMGNPRNSLDQSAVPQGVIGPVLPSLGYSGPRIPTSPTDIQQSRPLPASTLASALASATPEDQRVMLGEQLYPLVARVELSNAAKVTGMLLEMDQPEVLHLIESPDALKIKVAEAMEVLKKAAGAESEVSNQLGSLALDE | 654 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11550661 | 11553718 | + | Conep04aG0151300.1 | Cone4ag1461 | 436439 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1461 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 33 | 202 | IPR035979 | GO:0003676(InterPro) | |
Cone4ag1461 | 654 | SUPERFAMILY | PABC (PABP) domain | 512 | 642 | IPR036053 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 212 | 290 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | FunFam | Polyadenylate-binding protein | 557 | 639 | - | - | |
Cone4ag1461 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 121 | 198 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 316 | 393 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | Gene3D | - | 202 | 298 | IPR012677 | - | |
Cone4ag1461 | 654 | Gene3D | - | 299 | 401 | IPR012677 | - | |
Cone4ag1461 | 654 | Pfam | RNA recognition motif | 318 | 386 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | Pfam | RNA recognition motif | 214 | 281 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | Pfam | RNA recognition motif | 123 | 191 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | Pfam | RNA recognition motif | 35 | 105 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 312 | 400 | IPR035979 | GO:0003676(InterPro) | |
Cone4ag1461 | 654 | PANTHER | RNA BINDING PROTEIN | 25 | 208 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Cone4ag1461 | 654 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 33 | 111 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | CDD | RRM3_I_PABPs | 211 | 291 | - | - | |
Cone4ag1461 | 654 | CDD | RRM4_I_PABPs | 315 | 393 | - | - | |
Cone4ag1461 | 654 | SMART | rrm1_1 | 317 | 389 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | SMART | rrm1_1 | 213 | 286 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | SMART | rrm1_1 | 122 | 194 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | SMART | rrm1_1 | 34 | 107 | IPR000504 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | FunFam | Polyadenylate-binding protein | 122 | 195 | - | - | |
Cone4ag1461 | 654 | FunFam | Polyadenylate-binding protein | 299 | 404 | - | - | |
Cone4ag1461 | 654 | FunFam | Polyadenylate-binding protein | 10 | 116 | - | - | |
Cone4ag1461 | 654 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 561 | 638 | IPR002004 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | Gene3D | - | 558 | 637 | - | - | |
Cone4ag1461 | 654 | SMART | poly_2 | 573 | 636 | IPR002004 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | Pfam | Poly-adenylate binding protein, unique domain | 568 | 633 | IPR002004 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | CDD | RRM2_I_PABPs | 119 | 194 | IPR045305 | - | |
Cone4ag1461 | 654 | SMART | rrm2_1 | 122 | 194 | IPR003954 | GO:0003676(InterPro) | |
Cone4ag1461 | 654 | SMART | rrm2_1 | 34 | 107 | IPR003954 | GO:0003676(InterPro) | |
Cone4ag1461 | 654 | SMART | rrm2_1 | 317 | 389 | IPR003954 | GO:0003676(InterPro) | |
Cone4ag1461 | 654 | SMART | rrm2_1 | 213 | 285 | IPR003954 | GO:0003676(InterPro) | |
Cone4ag1461 | 654 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 33 | 634 | IPR006515 | GO:0003723(InterPro) | |
Cone4ag1461 | 654 | Gene3D | - | 10 | 114 | IPR012677 | - | |
Cone4ag1461 | 654 | Gene3D | - | 115 | 201 | IPR012677 | - | |
Cone4ag1461 | 654 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 306 | IPR035979 | GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone3ag0982 | Cone-Chr3:28625860 | Cone4ag1461 | Cone-Chr4:11550661 | 1.67E-209 | dispersed | |
Cone4ag1461 | Cone-Chr4:11550661 | Cone8ag1121 | Cone-Chr8:9919319 | 3.67E-213 | dispersed | |
Cone15ag0499 | Cone-Chr15:2399104 | Cone4ag1461 | Cone-Chr4:11550661 | 6.33E-09 | wgd | |
Cone4ag1461 | Cone-Chr4:11550661 | Cone7ag1475 | Cone-Chr7:10366037 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1461 | K13126 | - | mdm:114824749 | 880.167 |