Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1461 ATGGCGACGGCGATTCAGTCACCAATGGCTCAGGCTAACGCACCGGCGGCGGTGATGAATCAACCACCAGCAGTGGTGACCGGAGGATTTGGGAATGCATCGCTGTACGTGGGAGATTTGGACAAGAATGTGAATGAGGAACAACTCCTCGAACTGTTTGGCCAGGTCGGAACGGTGGCCTCTGTTAGGGTTTGTAGGGATCAGTCCCGCGGGCAATCACTTGGCTATGCCTACGTCAATTATGCGAGCCCTCAGGAAGCTTCCAATGCCATGGAGATGTTGAATTTCACTTCTGTTAATGGGAAGCCGATCAGGATTATGTTTTCTTATCGAGATCCCAGCCTTCGGAAAAGTGGATATGCCAATGTTTTTGTCAAGAACCTAGACACCTCAATTGATAACAAGGCATTGCATGATTCTTTTTCCGTCTTTGGAACTATCCTTTCATGTAAGGTAGCTGTTGATAGGAATGGTCAATCAAAAGGGTATGGGTTTGTGCAATTTGCAATCGAAGAATCTGCACAGAATGCCATTAAACGGTTGAATGGAATGCTGTTAAATGACAAGCAAGTTTACGTTGGACTTTTTGTTAGGCGTCAGGAAAGGAATGAAGCAAATGGATCGCCTAGATTTTTTAATGTTTATGTCAAGAATTTACCTGAAGAAACTACGGATGAGGACCTTAAGATGCTATTTGGATCTTATGGTACTATTACTAGCGCTGTTGTTATGCGGGACCCGGATGGGAAATCTCGACATTTCGGGTTTGTGAACTTTGAGGATTCAGAGGCGGCCGCTGCTGCAGTTGAGAAGTTGAATGGGACCACAATTGGCGAGGAAAATGTTCTGTATGTTGGTAGGGCCCAGAAGAAAGGGGAGAGAGAGGCAGAGTTGAGATCCAAATTTGAACAGGAAAGGATCAGTAGATATGAAAAGTTACAAGGTGCTAATTTATACATTAAGAATCTGGAAGATAACGTTACTGATGAGAATCTGAAGGAACTGTTTTCTGAGTTTGGAACAATCACATCATGCAAGGTCATGTTTGATCAACATGGGCACACCAAGGGCTGTGGTTTTGTGGCCTTCTCTTCACCAGAAGAAGCAACAAGAGCTCTGAATAGCATGAATAATAAGATGGTGGGGCAGAAACCTTTATATGTTGCTGTTGCCCAGCGCAGAGAAGAGAGAAAAGCTCGCCTGCTGGCACAGTTTTCCCAACTCAGAGCACCTGGTGTGATCCCGCCCTTCCCTTCTGGGGTCCACGGATTTCACCCTGGTACACCTAGAGTTGGCCCTCAACAACTCTTTTATGGTCAAGGAGCAGCTGGCCTTATGCCCCCTCAGCCTGCTGGTTTTGGCTTCCAACCCGGACTCCTTCCCGGAATGCGGCCTGGTGTTGCCCCAAATTTTATAATGCCTTATCAGCTTCAGAGGCAAGGTCAGCACGGGCAGCGCATGACCATTAGGCGAGGTGGCAACCACCCTCAGCACATGCATCAGCAACAGTTTCGGCAACACAACTCAGGTCAAGGCTTAAGGTACATGGGCAACCCAAGGAACAGTCTTGACCAATCAGCTGTTCCACAAGGTGTGATTGGCCCAGTGCTGCCTTCTTTGGGCTATTCCGGGCCCAGAATTCCTACCTCCCCTACTGACATCCAACAATCCCGGCCCTTGCCTGCATCTACCCTGGCCTCTGCATTAGCTTCCGCCACTCCAGAGGACCAGCGCGTGATGCTAGGAGAGCAACTATATCCCCTTGTGGCCCGTGTTGAGCTGAGCAATGCTGCAAAAGTGACGGGGATGTTGCTCGAGATGGATCAACCTGAGGTTCTTCATCTCATAGAATCTCCAGATGCTCTGAAGATTAAGGTGGCTGAGGCGATGGAAGTGCTTAAGAAAGCTGCTGGTGCCGAATCAGAGGTTTCCAATCAGCTCGGTTCATTGGCACTTGATGAGTGA 1965 48.3 MATAIQSPMAQANAPAAVMNQPPAVVTGGFGNASLYVGDLDKNVNEEQLLELFGQVGTVASVRVCRDQSRGQSLGYAYVNYASPQEASNAMEMLNFTSVNGKPIRIMFSYRDPSLRKSGYANVFVKNLDTSIDNKALHDSFSVFGTILSCKVAVDRNGQSKGYGFVQFAIEESAQNAIKRLNGMLLNDKQVYVGLFVRRQERNEANGSPRFFNVYVKNLPEETTDEDLKMLFGSYGTITSAVVMRDPDGKSRHFGFVNFEDSEAAAAAVEKLNGTTIGEENVLYVGRAQKKGEREAELRSKFEQERISRYEKLQGANLYIKNLEDNVTDENLKELFSEFGTITSCKVMFDQHGHTKGCGFVAFSSPEEATRALNSMNNKMVGQKPLYVAVAQRREERKARLLAQFSQLRAPGVIPPFPSGVHGFHPGTPRVGPQQLFYGQGAAGLMPPQPAGFGFQPGLLPGMRPGVAPNFIMPYQLQRQGQHGQRMTIRRGGNHPQHMHQQQFRQHNSGQGLRYMGNPRNSLDQSAVPQGVIGPVLPSLGYSGPRIPTSPTDIQQSRPLPASTLASALASATPEDQRVMLGEQLYPLVARVELSNAAKVTGMLLEMDQPEVLHLIESPDALKIKVAEAMEVLKKAAGAESEVSNQLGSLALDE 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11550661 11553718 + Conep04aG0151300.1 Cone4ag1461 436439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1461 654 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676(InterPro)
Cone4ag1461 654 SUPERFAMILY PABC (PABP) domain 512 642 IPR036053 GO:0003723(InterPro)
Cone4ag1461 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 FunFam Polyadenylate-binding protein 557 639 - -
Cone4ag1461 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 Gene3D - 202 298 IPR012677 -
Cone4ag1461 654 Gene3D - 299 401 IPR012677 -
Cone4ag1461 654 Pfam RNA recognition motif 318 386 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 Pfam RNA recognition motif 214 281 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 Pfam RNA recognition motif 123 191 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 Pfam RNA recognition motif 35 105 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 SUPERFAMILY RNA-binding domain, RBD 312 400 IPR035979 GO:0003676(InterPro)
Cone4ag1461 654 PANTHER RNA BINDING PROTEIN 25 208 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cone4ag1461 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 CDD RRM3_I_PABPs 211 291 - -
Cone4ag1461 654 CDD RRM4_I_PABPs 315 393 - -
Cone4ag1461 654 SMART rrm1_1 317 389 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 SMART rrm1_1 213 286 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 SMART rrm1_1 122 194 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 SMART rrm1_1 34 107 IPR000504 GO:0003723(InterPro)
Cone4ag1461 654 FunFam Polyadenylate-binding protein 122 195 - -
Cone4ag1461 654 FunFam Polyadenylate-binding protein 299 404 - -
Cone4ag1461 654 FunFam Polyadenylate-binding protein 10 116 - -
Cone4ag1461 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723(InterPro)
Cone4ag1461 654 Gene3D - 558 637 - -
Cone4ag1461 654 SMART poly_2 573 636 IPR002004 GO:0003723(InterPro)
Cone4ag1461 654 Pfam Poly-adenylate binding protein, unique domain 568 633 IPR002004 GO:0003723(InterPro)
Cone4ag1461 654 CDD RRM2_I_PABPs 119 194 IPR045305 -
Cone4ag1461 654 SMART rrm2_1 122 194 IPR003954 GO:0003676(InterPro)
Cone4ag1461 654 SMART rrm2_1 34 107 IPR003954 GO:0003676(InterPro)
Cone4ag1461 654 SMART rrm2_1 317 389 IPR003954 GO:0003676(InterPro)
Cone4ag1461 654 SMART rrm2_1 213 285 IPR003954 GO:0003676(InterPro)
Cone4ag1461 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 33 634 IPR006515 GO:0003723(InterPro)
Cone4ag1461 654 Gene3D - 10 114 IPR012677 -
Cone4ag1461 654 Gene3D - 115 201 IPR012677 -
Cone4ag1461 654 SUPERFAMILY RNA-binding domain, RBD 208 306 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0982 Cone-Chr3:28625860 Cone4ag1461 Cone-Chr4:11550661 1.67E-209 dispersed
Cone4ag1461 Cone-Chr4:11550661 Cone8ag1121 Cone-Chr8:9919319 3.67E-213 dispersed
Cone15ag0499 Cone-Chr15:2399104 Cone4ag1461 Cone-Chr4:11550661 6.33E-09 wgd
Cone4ag1461 Cone-Chr4:11550661 Cone7ag1475 Cone-Chr7:10366037 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1461 K13126 - mdm:114824749 880.167