Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1464 ATGGCGAGGTCTTCAAGAACAACATCATCCTCTTCGGGAAAAGCGGGTGAAGATTTCTCTTATCCATGGACTTTCATCCCCTTACAAAAACTCAATTTCACTATAGACAACATCTTAGAATGCCTGAAAGATGAAAACGTGATAGGAAAAGGTTGTTCAGGGGTTGTCTACAAGGCAGAAATGCCTAGCGGGGAATTGATTGCCGTGAAAAAGCTTTGGAAAACGAAGCAAGATGAAGAACATCCTATAGACTCGTTCGGGGTCGAAATTGAAATTCTGGGTCATATTAGGCACCGGAACATAGTGAAGCTACTAGGATATTGTTCGAACAAAAGCGTCAAGCTCCTTCTCTACAACTACATTTCAAATGGCAATCTACAACAACTATTGGAAGGGAATAGGAACTTGGATTGGGAAACTAGGTATAAGATAGCTATTGGCTCGGCTCAGGGCCTAGCTTATCTGCATCATGATTGTGTCCCGACAATTCTTCATAGAGACGTCAAGTGCAATAACATTCTTCTAGACTCAAAGTTTGAGGCTTATCTTGCCGATTTTGGTCTGGCAAAGCTTATGAACACTCCGAGTTATCACCATGCCGTGTCTAGAGTAGCCGGGTCCTATGAGTATGGATACACGACGAACATAACAGAAAAGAGTGATGTCTATAGTTACGGAGTTGTTCTGCTAGAGAAACTAAGCGGAAGACGGGCTTCACATTGTGGAATGGGTGAAGAAGAAGATGGGGAGCTTTGA 756 42.86 MARSSRTTSSSSGKAGEDFSYPWTFIPLQKLNFTIDNILECLKDENVIGKGCSGVVYKAEMPSGELIAVKKLWKTKQDEEHPIDSFGVEIEILGHIRHRNIVKLLGYCSNKSVKLLLYNYISNGNLQQLLEGNRNLDWETRYKIAIGSAQGLAYLHHDCVPTILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPSYHHAVSRVAGSYEYGYTTNITEKSDVYSYGVVLLEKLSGRRASHCGMGEEEDGEL 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11559360 11560247 - Conep04aG0151600.1 Cone4ag1464 436442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1464 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1464 251 Pfam Protein kinase domain 44 237 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1464 251 FunFam Protein kinase superfamily protein 121 191 - -
Cone4ag1464 251 Gene3D Phosphorylase Kinase; domain 1 7 120 - -
Cone4ag1464 251 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524(InterPro)
Cone4ag1464 251 SMART serkin_6 42 251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1464 251 Gene3D Transferase(Phosphotransferase) domain 1 121 250 - -
Cone4ag1464 251 SUPERFAMILY Protein kinase-like (PK-like) 23 238 IPR011009 -
Cone4ag1464 251 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 239 IPR050647 -
Cone4ag1464 251 ProSiteProfiles Protein kinase domain profile. 42 251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1464 251 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 23 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1464 Cone-Chr4:11559360 Cone5ag0784 Cone-Chr5:3359258 2.87E-73 dispersed
Cone17ag0766 Cone-Chr17:5805973 Cone4ag1464 Cone-Chr4:11559360 2.71E-113 wgd
Cone20ag0356 Cone-Chr20:1593832 Cone4ag1464 Cone-Chr4:11559360 3.47E-127 wgd
Cone4ag1464 Cone-Chr4:11559360 Cone7ag1472 Cone-Chr7:10357304 1.88E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82793 PF13499 EF-hand_7 2.20E-18 CL0220 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1464 - - - 0.0