Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1474 ATGGGCTGTGCTCAGGGAAAGTCTTCATCGAATTCACCCCCTCGAGGCTTAGAGAAGCTCAAATTCGAAAATGGGTATGCCGGAAAATCCACATTCGATAACAATCAAAGATCCACGGATCAGAAATTTGCGCTCATGGAGTCTAAATTGGCCAACCATAAGCCGCCGCCGGCGCCACATCGACCTCAATTTAGAAACTACAATTCAGACACAGGTGGTGGCGACACCTCTGCCGGAAGAGGTGGTGGAGAAGGACGGAAAATAACTTCAGCCAGAAAGGGGAAGAGAGATGGTGGTAGTGATGGCAGTAGTCGAGTTACGATCACTTCAAGGGGATCTTCAATGTCTAAGTCTGGAGAAGATGAATTGATCGGAGGCTGGCCAAAATGGTTAACTGATAATATTCCAAGAGAAGTTCTTTCTCGATTGGTCCCAAAAAGTGCTGAATCTTACGATAAGATCGATAAGGTAGGCCAGGGAACTTATAGCAATGTGTACAAAGCTCGAGACAGGGATACTGGAAAAATCGTGGCATTAAAGAAAGTCCGATTCGATACATCAGAACCAGAGAGTGTGAAATTCATGGCAAGAGAGATCATGATGTTACAGAAACTGGATCATCCTAATATAGTCAAACTAGAAGGATTAGCCACGTCCAGAATGCAGTTCAGTATCTATCTTGTTTTCGAGTTCATGCCGACTGATCTGTCCCGACTTATAGCCCGGCCAGAAGGCCTTACGGAAGCCCAGATTAAGTTTTATATGCATCAACTGCTTTCGGGTCTACAGCATTGCCACGATAGGGGAATATTACATAGAGACATTAAAGGATCAAATTTACTGATCGATAAAAACGGGATTCTTAAGATTGCAGATTTTGGGCTTGCTAATTATTTTAATAGGAGCTCGAAGCACCCTCTTACGAACCGGGTTGTTACTCTTTGGTATAGAGCTCCTGAGCTTTTACTAGGTTCGACGGATTATGGTATGGGCATAGATTTATGGAGTGCCGGATGCTTATTGGCTGAAATGTTTACTGGAAAACCGTTATTGCCCGGTCGAAACGAGATTGAGCAACTTCACAAGATTTTCAAGCTATGTGGGACCCCATCTGAAGAATATTGGAGCAAATTGAAGCTTTCAACAAAGCTTAGACCTCCACATTCATATAAACCGAATACCGTGGAAGCGTTTAGGGATTTACCGGAATCTTCTTTGGGTCTATTGAGGACGCTTCTTGCTCTAGATCCGGCTTATCGTGGAGGTGCATCTTTAGCCCTACAGAATGAATTCTTTTACAAAAGCCCATTGGCATGTGACCTTTCGGAATTGCCTGTGATACATAATGTCGAGGAAGATGAATCGAAACAAGTCATTGAACAGAGGAAGCTGAGAAATTCTAAAATGAAACATCGTTATAGAACTCAACGCGAGCATCGGAAGAAAGATCCAACAGCCGTAGAACCGGTTGAAGATCATGTGTTTTTGAAAGAGTCTGTGGAGAAAAATGCCAATTGGACAACTACAACAAGTTCATCTAATTCGGGGCTAAACACGGAATTTGTTATGAATCAGGAGAGATCCCACTTACTGTTTCCGTCTCCTATGGCTTCTCCGATTAGGTCTCCAAGGACCCCATATCATTTTGATGCAAACAATTACATAAACTACAATATGACCAAGAACATAGCTCCATTGTCTGTTTCTAGACGGCATAATAATAAAGACGATATCGTATACGCTACGAGCCGGGTCCCCAGGTCGGTCTCGACCCGAGAATACAGAAATATTTACAGGAAAGAGCGATTAGAGATCTCCACTTTTGATGACTAG 1833 43.15 MGCAQGKSSSNSPPRGLEKLKFENGYAGKSTFDNNQRSTDQKFALMESKLANHKPPPAPHRPQFRNYNSDTGGGDTSAGRGGGEGRKITSARKGKRDGGSDGSSRVTITSRGSSMSKSGEDELIGGWPKWLTDNIPREVLSRLVPKSAESYDKIDKVGQGTYSNVYKARDRDTGKIVALKKVRFDTSEPESVKFMAREIMMLQKLDHPNIVKLEGLATSRMQFSIYLVFEFMPTDLSRLIARPEGLTEAQIKFYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGILKIADFGLANYFNRSSKHPLTNRVVTLWYRAPELLLGSTDYGMGIDLWSAGCLLAEMFTGKPLLPGRNEIEQLHKIFKLCGTPSEEYWSKLKLSTKLRPPHSYKPNTVEAFRDLPESSLGLLRTLLALDPAYRGGASLALQNEFFYKSPLACDLSELPVIHNVEEDESKQVIEQRKLRNSKMKHRYRTQREHRKKDPTAVEPVEDHVFLKESVEKNANWTTTTSSSNSGLNTEFVMNQERSHLLFPSPMASPIRSPRTPYHFDANNYINYNMTKNIAPLSVSRRHNNKDDIVYATSRVPRSVSTREYRNIYRKERLEISTFDD 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11592676 11595398 + Conep04aG0152600.1 Cone4ag1474 436452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1474 610 PANTHER CELL DIVISION PROTEIN KINASE 150 432 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone4ag1474 610 ProSiteProfiles Protein kinase domain profile. 151 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1474 610 MobiDBLite consensus disorder prediction 28 45 - -
Cone4ag1474 610 MobiDBLite consensus disorder prediction 86 100 - -
Cone4ag1474 610 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524(InterPro)
Cone4ag1474 610 FunFam probable serine/threonine-protein kinase At1g54610 138 233 - -
Cone4ag1474 610 Pfam Protein kinase domain 151 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1474 610 MobiDBLite consensus disorder prediction 102 117 - -
Cone4ag1474 610 MobiDBLite consensus disorder prediction 466 487 - -
Cone4ag1474 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1474 610 MobiDBLite consensus disorder prediction 1 121 - -
Cone4ag1474 610 FunFam Putative serine/threonine-protein kinase 234 471 - -
Cone4ag1474 610 Gene3D Phosphorylase Kinase; domain 1 140 233 - -
Cone4ag1474 610 MobiDBLite consensus disorder prediction 1 15 - -
Cone4ag1474 610 SUPERFAMILY Protein kinase-like (PK-like) 145 437 IPR011009 -
Cone4ag1474 610 Gene3D Transferase(Phosphotransferase) domain 1 235 475 - -
Cone4ag1474 610 SMART serkin_6 151 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1474 K08819 - - cit:102614621 640.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1474 Cone-Chr4:11592676 Cone7ag0178 Cone-Chr7:747060 3.26E-142 dispersed
Cone4ag1474 Cone-Chr4:11592676 Cone6ag1312 Cone-Chr6:10524238 5.22E-171 wgd
Cone4ag1474 Cone-Chr4:11592676 Cone7ag1466 Cone-Chr7:10327736 6.57E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82794 PF02263 GBP 4.90E-38 CL0023 Cone PK