Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1479 ATGGTTTCTTCTTCTACCTCTCTGCTACTCACCATCTCTTGCCTAATTTTCATGATATCTTGTTCATCATCTCATGGCTCCGATTATGAAGATAAGGTAAGATCCTCTGTTCCTCTAACGAAGGGCCTCTCATGGAGTTTCTACAAGTCAACTTGTCCTAAGCTCGAGTCAATTGTCAGAAAAGAGCTTAAGAAAGTCTTTAAAGACGACATCGGCCAAGCTGCCGGCCTACTCCGTCTCCATTTTCACGACTGCTTCGTCCAAGGATGTGACGGTTCAGTCCTCCTGGACGGATCAGCAAGCGGACCAAGCGAGCAGAATGCACCCCCTAACCTGAGCTTAAGGGCAAAGGCATTCGAAATCATCAACAACTTGCGCCAACTTGTCCATGACAAGTGTGGAAGAGTCGTCTCCTGCGCTGACCTTACTGCCCTTGCTGCCCGTGATTCTGTTGCCCTGTCCGGCGGGCCCGACTACGACGTGCCACTTGGAAGAAAGGATGGTCTCAATTTCGCCACGCAAGAAGCCACCCTGGCCAATCTTCCAGCAGCATCGACCAACGCCTCCGTACTTCTTACCCAGCTTGCGACGAAGAACTTGAACCCGACCGACGTGGTAGCGCTTTCCGGTGGCCACACGATCGGGCTGTCCCACTGCCAGCCCTTCTCGGACCGTCTCTACCCGACCCAAGATCCTACCATGGAGAAAACCTTCGCTAACGACCTCAAAACCGCTTGTCCGGAGCAAGGTGCATCTAACGAGACGACCGTCGTGTTGGACATTCGATCCCCGAACAAGTTCGACAACAAGTACTACGTCAACTTGAAGAACCGTCAGGGATTGTTCACTTCGGATCAGGATTTGTACACGGATGAGAGCACAAGGCAGATCGTGACTAGCTTTGCCGTTGACCAGGATCTTTTCTTCGATAAGTTTGTGGATTCGATGGTTAAGATGGGTCAGTTGAGTGTGTTGACTGGTAAACAAGGAGAGATTCGTGCTGATTGTTCCGTCAGGAACTCTGATAATACGTTGCTGAAAACTGTGGTGGAAGATGATGATGCTGAGCTGGATCGCTCTGAGCTTTGA 1089 50.69 MVSSSTSLLLTISCLIFMISCSSSHGSDYEDKVRSSVPLTKGLSWSFYKSTCPKLESIVRKELKKVFKDDIGQAAGLLRLHFHDCFVQGCDGSVLLDGSASGPSEQNAPPNLSLRAKAFEIINNLRQLVHDKCGRVVSCADLTALAARDSVALSGGPDYDVPLGRKDGLNFATQEATLANLPAASTNASVLLTQLATKNLNPTDVVALSGGHTIGLSHCQPFSDRLYPTQDPTMEKTFANDLKTACPEQGASNETTVVLDIRSPNKFDNKYYVNLKNRQGLFTSDQDLYTDESTRQIVTSFAVDQDLFFDKFVDSMVKMGQLSVLTGKQGEIRADCSVRNSDNTLLKTVVEDDDAELDRSEL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11599858 11601257 - Conep04aG0153100.1 Cone4ag1479 436457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1479 362 PRINTS Plant peroxidase signature 155 170 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Plant peroxidase signature 203 215 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Plant peroxidase signature 136 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Plant peroxidase signature 52 71 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Plant peroxidase signature 274 291 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Plant peroxidase signature 76 96 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Plant peroxidase signature 258 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Plant peroxidase signature 117 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Plant peroxidase signature 314 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PANTHER - 36 338 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 Gene3D Peroxidase, domain 2 183 320 - -
Cone4ag1479 362 PRINTS Haem peroxidase superfamily signature 137 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Haem peroxidase superfamily signature 74 88 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Haem peroxidase superfamily signature 155 167 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Haem peroxidase superfamily signature 204 219 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 PRINTS Haem peroxidase superfamily signature 260 275 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 Pfam Peroxidase 59 303 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 FunFam Peroxidase 46 196 - -
Cone4ag1479 362 Gene3D - 47 337 - -
Cone4ag1479 362 ProSitePatterns Peroxidases active site signature. 74 85 IPR019794 GO:0004601(InterPro)
Cone4ag1479 362 ProSitePatterns Peroxidases proximal heme-ligand signature. 204 214 IPR019793 -
Cone4ag1479 362 CDD secretory_peroxidase 42 338 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cone4ag1479 362 SUPERFAMILY Heme-dependent peroxidases 42 340 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 ProSiteProfiles Plant heme peroxidase family profile. 42 340 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1479 362 FunFam Peroxidase 182 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1479 Cone-Chr4:11599858 Cone6ag1651 Cone-Chr6:12612075 1.57E-76 dispersed
Cone4ag1479 Cone-Chr4:11599858 Cone4ag1480 Cone-Chr4:11602469 2.00E-207 tandem
Cone4ag1479 Cone-Chr4:11599858 Cone5ag0153 Cone-Chr5:650032 9.79E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1479 K27796 - rcu:8283183 511.916