Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1482 ATGGCAAAGCGCGTGTACGAAGTCTGGAAAGGAAGTAATAAATTTATCCTTGGTGGGAGGCTAATATTCGGGCCCGATGCTAGATCACTGCTCATCACATTAATGCTAATAACTGTTCCAGTTATAGTATTCTGTGTTTTTGTTGCAAGGCATCTTCGACATGCGTTTTCCTCATATAATGCTGGATATGCTGTTCTGATTATGGCTGTTGTCTATACTCTCTATGTACTGGTCCTTCTTTTTCTTACTTCAGCTCGAGACCCAGGAATAATTCCACGTAACTCACATCCACCCGAGGAAGAATTCCATTACGACACCTCAGTTGATCCTGGAGGAAGACGAACCCCAAGCCTTCAGTTCCCTCGTACAAAAGAAGTTATGGTCAATGGCGTTTATGTTAGGGTCAAATATTGCGACACTTGTATGCTTTATCGTCCTCCTCGTTGCTCTCATTGCTCCATTTGCAACAACTGTGTCGAGCGTTTTGACCACCATTGTCCCTGGGTGGGCCAGTGCATTGGACTGCGGAACTATCGTTACTTCTTTATGTTTGTTTCTTCTGCAACTCTTCTTTGTGTCTACGTGTTTGCCATGTCTGCTTATTACATCAAAGTTCTGATGAATGACGACAATAAGGGCACAGTTTGGAAGGCAATGAAAGATTCCCCTGCATCTGTCATACTTATGGTCTATTGTTTCATCTCCCTCTGGTTTGTTGGTGGGCTAACAGGCTTCCATCTGTACCTTATTGGCAGTAACCAGACAACCTATGAGAATTTCCGGTACAGAGCCGACAACAGGGTTAATGTTTACAACAGGGGATGTTTAAACAATTTCCTTGAAGTATTTTGCACAAAAGTAAAGCCCTCAGCCAACAACTTCAGGGCCCAAGTTCAAGAGGAGGTGCAGAGACCTTTGGGCCACCTCCCCCATCATCATTCCCCTCTACCTGTTTGCAGTGGGCCCGATGCAGATGAATTTGGCGGGGACCCACGTTTGAAGGTAGAGGACGATCTAGAGATAGGTGAAGACTTGTTGAAAATCTCACAACGACGTAACATTGAAGAGATTGATGAAGATATACGCAGCAGAGGAAGCAATGGACCTCAGCTCAATACTTCAGAGATTGACTCTGCTTTGGGCTCTGATCATCGGGCCCCCACAATCCGATCCGACGCACGGCATTCGAGCTGGGGAAGGAGAAGTGGGAGCTGGGAAATTGCAGCCGACGTTGCTAATTCAGGCGTGACGGAAGGCAGAAGCCATGTCACTCCTAAGGATGCAAGACTATGA 1293 46.02 MAKRVYEVWKGSNKFILGGRLIFGPDARSLLITLMLITVPVIVFCVFVARHLRHAFSSYNAGYAVLIMAVVYTLYVLVLLFLTSARDPGIIPRNSHPPEEEFHYDTSVDPGGRRTPSLQFPRTKEVMVNGVYVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSATLLCVYVFAMSAYYIKVLMNDDNKGTVWKAMKDSPASVILMVYCFISLWFVGGLTGFHLYLIGSNQTTYENFRYRADNRVNVYNRGCLNNFLEVFCTKVKPSANNFRAQVQEEVQRPLGHLPHHHSPLPVCSGPDADEFGGDPRLKVEDDLEIGEDLLKISQRRNIEEIDEDIRSRGSNGPQLNTSEIDSALGSDHRAPTIRSDARHSSWGRRSGSWEIAADVANSGVTEGRSHVTPKDARL 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11608182 11611756 + Conep04aG0153400.1 Cone4ag1482 436460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1482 430 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 38 300 - GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0006612(PANTHER)|GO:0018230(PANTHER)|GO:0019706(PANTHER)
Cone4ag1482 430 MobiDBLite consensus disorder prediction 365 379 - -
Cone4ag1482 430 Pfam DHHC palmitoyltransferase 136 261 IPR001594 GO:0016409(InterPro)
Cone4ag1482 430 MobiDBLite consensus disorder prediction 359 401 - -
Cone4ag1482 430 ProSiteProfiles DHHC domain profile. 136 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1482 K16675 - - rcu:8283181 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0031 Cone-Chr11:181321 Cone4ag1482 Cone-Chr4:11608182 4.30E-142 dispersed
Cone18ag1446 Cone-Chr18:9722676 Cone4ag1482 Cone-Chr4:11608182 1.80E-143 dispersed
Cone3ag0508 Cone-Chr3:2521925 Cone4ag1482 Cone-Chr4:11608182 3.95E-113 dispersed
Cone4ag0036 Cone-Chr4:200017 Cone4ag1482 Cone-Chr4:11608182 2.48E-67 dispersed
Cone4ag1482 Cone-Chr4:11608182 Cone5ag0010 Cone-Chr5:75283 1.96E-20 dispersed
Cone4ag1482 Cone-Chr4:11608182 Cone7ag1462 Cone-Chr7:10314403 4.35E-281 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1350 . . . . . . . . . Cmo15g00592 . . . . . . Cpe13g00691 Bhi04g02172 . . . . . . Cla08g00276 Cam08g0717 Cec08g0271 Cco08g0364 Clacu08g0427 . Cre08g0252 Cone4ag1482 Cone7ag1462 . . . . . Cme03g00914 Blo17g00138 Blo18g00149 . Bda13g01422 Bpe02g01102 Bpe14g00435 Bma01g01434 Bma02g00157 . . . . . . Car15g00544 . . . . . . . . . . . . . . . . Lsi08g00248 . Chy03g00271 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002682 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 3 3 2 58