Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1486 ATGGATACCAAAGGGCGGCTGATTGCTGGCTCTCACAACAGAAACGAGTTCGTTCTCATCAATGCTGACGAGGTTGCTCGAGTGACCTCTGTGAAAGAACTAAGTGGGCAGATATGTCAGATCTGTGGAGATGAGATAGAAATCACTGTAGATGGTGAGCCCTTTGTTGCTTGCAATGAATGTGCTTTCCCTGTCTGTAGGCCTTGCTATGAGTATGAAAGAAGAGAAGGAAATCAGGCCTGTCCTCAATGCAAAACCCGGTACAAGCGCATCAAAGGCAGTCCTCGAGTTGAAGGGGACGAGGAAGAAGAAGACATTGATGATTTGGAGAATGAATTCGATATCTCTTCCAAAGATGGTCACCTCTATGGTGATTCCACGCTCCCACCTCACTTCACTGTGGGTGGGAATCATATGTATCATACCGGGCCTGATTCCTCTGCTGCTACTCCTACTGATATTCCTCTCCTGACCTATGGCCAAGAGGATGCTGGGATTTCCGCTGATAAGCATGCTCTGATTATACCACCTTTTATGAGCCGCGGGAAACGGGTTCATCCTATGCCCTTTAATGACACTGCTTCCATGTCTGGTGTTCAACCAAGGCCGATGGATCCTAAGAAGGATTTGGCAGTGTATGGGTACGGAACTGTGGCATGGAAGGAAAGAATGGAGGAGTGGAAGAAGAAGCAGAACGAGAAACTTCAGGTGGTTAGACATGAAGGAGGAAGTGGAGATGGAAAGAATGATGATGACTTTGATGATCCTGATTTTCCCATGATGGATGAAGCTAGACAGCCACTTTCGAGAAAGTTGCCAATTTCCTCAAGCAGGATAAATCCTTATCGAATGATAATTGTACTCCGAATAGTGATTCTTGCACTTTTTTTCCATTATCGAATCCTCCATCCTGTAGATGATGCTTATGGATTATGGTTAACCTCGGTTATCTGTGAGATATGGTTTGCTGTCTCATGGATTTTGGATCAGTTCCCTAAATGGTGCCCAATTAAACGAGAAACTTACCTCGATCGCTTATCATTGAGGTATGAGAAAGAAGGGAAGCCCTCTGAGTTAGCCAATCTGGACATTTTTGTCAGTACGGTGGATCCTTTGAAGGAGCCGCCACTTATTACTGCTAATACGGTCCTTTCGATCCTGGCTGTTGATTATCCAGTGGATAAAGTTTCTTGCTATGTTTCTGATGATGGTGCTGCCATGCTTACTTTTGAGGCTCTCTCTGAAACGTCAGAGTTTGCAAGGAAGTGGGTCCCCTTCTGTAAGAAATTCAATATTGAACCCCGGGCCCCGGAATGGTATTTTGCTCAGAAGGTCGACTATTTAAAAGATAAAGTCGAACCAGTATTTGTCAGGGAACGACGAGCAATGAAGAGGGAGTATGAAGAATTCAAAGTTCGAATCAATGGGCTAGTTGCTATGGCGCAGAAGGTTCCAGAAGATGGTTGGACAATGCAAGATGGAACTCCATGGCCTGGGAACTTGGTGAGAGATCATCCTGGAATGATTCAGGTTTTCCTTGGTGAGAATGGTGTTGGGGACATAGAGGGAAACAAACTACCCACCCTCGTGTATGTTTCTCGTGAGAAGAGACCAGGATTTGACCACCATAAGAAAGCCGGTGCCATGAATTCTCTGGTGAGAGTCTCTGCAATCATCTCAAATGCTCCTTACATACTGAATGTGGATTGTGATCACTACATCAACAATAGTAGGGCGCTAAGGGAAGCTATGTGCTTTATGATGGACCCCATTTCCGGAAAGAAAATATGCTACGTGCAATTTCCCCAAAGATTTGATGGTATTGATCGACATGATAGATACTCAAATCGTAATGTTGTATTCTTTGATATCAATATGAAAGGTTTAGATGGAATTCAAGGGCCAATTTATGTCGGAACTGGGTGCGTCTTTAGAAGACAGGCACTATATGGATATGATGCCCCTGCCAAGAAGAAAACCCCACGAAAGACTTGTAATTGTTGGCCTAGATGGTGTTGTTTTTGTTGTGGATCTCGAAAGAAGACTAAGAAAGTGAAGTCAAGTGAGAAGAAGAGGTTGAAGAACAAGGATGCTTCAAAGCAGATTCATGCTCTAGAAAATATTGAAGAGGGTATTGAAGGAATAGATAGTGAAAAGTCATCTCTAATGCCCCAAATTAAGTTCGAGAAGAAATTTGGGCAGTCCCCAGCATTCATAGCTACTACTCTTATGGAAGATGGTGGCATTCCGTCAGGAGCAACTTCTGCTTCGCTCTTGAAAGAAGCCATTCATGTTATCAGCTGTGGTTATGAAGACAAATCAGAATGGGGAAAAGAGGTTGGATGGATTTACGGTTCAGTTACAGAGGATATTTTAACTGGCTTCAAAATGCATTGCCATGGATGGCGATCAGTTTACTGTATACCCAAAAGACCTGCATTTAAAGGTTCAGCTCCTATCAATCTCTCAGACCGTCTCCACCAGGTTCTTCGGTGGGCCCTGGGATCAGTCGAGATTCTCTTGAGCAGGCACTGTCCGATCTGGTATGGCTATGGCTGTGGCTTGAAGTGGCTCGAGCGATTCTCTTACATAAACTCTGTTGTCTATCCATTGACCTCTATTCCCTTGATCGCCTATTGTACCCTCCCTGCTGTTTGCCTCCTCACCGGAAAGTTCATCGTCCCTGAGCTAAGCAACTATGCAAGTATAATTTTCATGGCCCTCTTCATATCCATAGCAGCAACTGGTATACTCGAAATGCAATGGGGACAGGTGGGAATCCACGATTGGTGGAGAAACGAGCAGTTTTGGGTGATAGGAGGTGTTTCTGCTCACCTCTTTGCCTTATTCCAAGGTTTGCTTAAAGTCTTAGCCGGAGTTAACACAAACTTTACGGTCACATCTAAAGCAGCAGATGACGGGGAGTATTCTGAGCTCTACCTCTTCAAATGGACATCCCTTTTGATTGCACCCATGACCTTACTAATCATAAACATCATTGGAGTTGTTGTTGGTGTCTCTGACGCCATCAATAACGGGTACGATTCTTGGGGTCCGCTCATCGGTAAGCTTTTCTTTGCCTTCTGGGTCATTGTCCATTTGTATCCATTCCTCAAGGGTTTGATGGGAAAACAAGACAAGGTTCCCACCATTCTAATTGTGTGGTCAATTCTTCTCTCCTCTATATTCTCACTCTTGTGGGTCCGAATCAACCCGTTCCTGTCCAGAGGTGGGATTGTATTAGAGGTTTGTGGTCTTAACTGTGACAATGATTAA 3276 44.41 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEEDIDDLENEFDISSKDGHLYGDSTLPPHFTVGGNHMYHTGPDSSAATPTDIPLLTYGQEDAGISADKHALIIPPFMSRGKRVHPMPFNDTASMSGVQPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVRHEGGSGDGKNDDDFDDPDFPMMDEARQPLSRKLPISSSRINPYRMIIVLRIVILALFFHYRILHPVDDAYGLWLTSVICEIWFAVSWILDQFPKWCPIKRETYLDRLSLRYEKEGKPSELANLDIFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVEPVFVRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNLVRDHPGMIQVFLGENGVGDIEGNKLPTLVYVSREKRPGFDHHKKAGAMNSLVRVSAIISNAPYILNVDCDHYINNSRALREAMCFMMDPISGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKTPRKTCNCWPRWCCFCCGSRKKTKKVKSSEKKRLKNKDASKQIHALENIEEGIEGIDSEKSSLMPQIKFEKKFGQSPAFIATTLMEDGGIPSGATSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPELSNYASIIFMALFISIAATGILEMQWGQVGIHDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVNTNFTVTSKAADDGEYSELYLFKWTSLLIAPMTLLIINIIGVVVGVSDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTILIVWSILLSSIFSLLWVRINPFLSRGGIVLEVCGLNCDND 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11633123 11638674 - Conep04aG0153800.1 Cone4ag1486 436464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1486 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Cone4ag1486 1091 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Cone4ag1486 1091 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cone4ag1486 1091 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 274 1058 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone4ag1486 1091 Coils Coil 99 119 - -
Cone4ag1486 1091 Pfam Cellulose synthase 362 1076 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone4ag1486 1091 MobiDBLite consensus disorder prediction 238 260 - -
Cone4ag1486 1091 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 900 IPR029044 -
Cone4ag1486 1091 CDD mRING-HC-C4C4_CesA 37 87 - -
Cone4ag1486 1091 FunFam Cellulose synthase 21 112 - -
Cone4ag1486 1091 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 520 656 IPR029044 -
Cone4ag1486 1091 FunFam Cellulose synthase 479 653 - -
Cone4ag1486 1091 SUPERFAMILY RING/U-box 28 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0800 Cone-Chr18:4711339 Cone4ag1486 Cone-Chr4:11633123 0 dispersed
Cone4ag1486 Cone-Chr4:11633123 Cone9ag1255 Cone-Chr9:9240088 0 dispersed
Cone4ag1486 Cone-Chr4:11633123 Cone6ag1303 Cone-Chr6:10472077 0 wgd
Cone4ag1486 Cone-Chr4:11633123 Cone7ag1458 Cone-Chr7:10292094 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1486 K10999 - csv:101214061 1962.96