Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1498 ATGGCGTCGTCCAAGTTGATGGCGTCTTCAAATTCGAGAAATTCAGATCCACCTCGACGTTTTTCTTCTTCTTCGTCTAAAAAACAACCTCAATCTATCACAGATCACATCAAAACTAGTAATAGTGATCATAACCGTCTGACCAATAGGACTTATAGTAATCTCGCCGCCTCGATGACCGTCGACGGTCTTCTCCGCAATGTCTACGATTCTCATACCGCCGCCGAGTCCACTCTTTTAGACGCGCAGATTAGCCTAGTCGACACCCCCAATCCTTCTTCCTTCTCCTCCACCTCCACCTCCGCCGCCGCCACTACTGCTACCTCGGCTCCCATCGATAACAGTACCAACACTTCCTTCTCGACTGCTCTAAGAACAGTGGACGATGTGTGGAGGGACATCGTCTCCGGCGAGGGAAAGGAGTTAAAGGAGGAGGCTCCCGAGATGATGACGCTCGAGGATTTTCTCACCAAAGCTGGAGCTGTTGAAGACGTGGACGTCAAGGTGCCGCTTCAAACTGAGAGTTTGAACGGAGGTGTTTTTGCGTTTGACCTGATGCCTCAGAGTCCGTTCCAGGCGGTTGAGGAGGTTGAGAGAGAGATAATAGGGTTTGGAAATGGAGCTGAGGCGATCGGAAGTGGAGGAGGAGAAGGAGGAAGAGGCAGAGGGAGAGGGAAGAGAGGGGCAGTTGCTTTGGAGCCGTTGGATAAAGCTGCACAGCAGCGACAGAAGAGGATGATTAAGAACAGAGAATCCGCTGCCAGGTCCAGAGAAAGGAAGCAGGCTTACCAAGTTGAATTGGAGTCCCTATCCGTGAGGCTTGAGGAAGAAAATGCTCTGTTAACGAGGGAGAAGGATGAGAGGACGAAGGAAAGGTACAAGCAGCTAATGGAGAAGGTAATCCCTGTTGTGGAGAAGCGAAGGCCGCTGCATTCCCTTCGAAGAGTTCACTCCCTGGAATGGTAG 966 51.14 MASSKLMASSNSRNSDPPRRFSSSSSKKQPQSITDHIKTSNSDHNRLTNRTYSNLAASMTVDGLLRNVYDSHTAAESTLLDAQISLVDTPNPSSFSSTSTSAAATTATSAPIDNSTNTSFSTALRTVDDVWRDIVSGEGKELKEEAPEMMTLEDFLTKAGAVEDVDVKVPLQTESLNGGVFAFDLMPQSPFQAVEEVEREIIGFGNGAEAIGSGGGEGGRGRGRGKRGAVALEPLDKAAQQRQKRMIKNRESAARSRERKQAYQVELESLSVRLEEENALLTREKDERTKERYKQLMEKVIPVVEKRRPLHSLRRVHSLEW 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11671434 11672859 + Conep04aG0155000.1 Cone4ag1498 436476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1498 321 Pfam bZIP transcription factor 239 298 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1498 321 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 54 294 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cone4ag1498 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 239 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1498 321 MobiDBLite consensus disorder prediction 1 48 - -
Cone4ag1498 321 Gene3D - 239 298 - -
Cone4ag1498 321 SMART brlzneu 237 301 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1498 321 Coils Coil 253 291 - -
Cone4ag1498 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 244 259 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1498 321 SUPERFAMILY Leucine zipper domain 241 292 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1498 321 CDD bZIP_plant_BZIP46 241 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1498 K14432 - - csv:101223110 282.722
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1498 Cone-Chr4:11671434 Cone8ag0972 Cone-Chr8:9148632 1.53E-19 dispersed
Cone4ag1498 Cone-Chr4:11671434 Cone7ag1450 Cone-Chr7:10259165 6.58E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1370 Blo01g01730 . . Bda03g00393 Bpe02g00211 Bpe04g00355 Bma04g00371 Bma01g02509 Cmo04g02568 Cmo15g00598 . . Car01g00864 . . . . . . . . . . . . . . . . . . Cone4ag1498 Cone7ag1450 . . . . . . . . Bda11g00872 . . . . . . . . . . Car04g02360 Car15g00550 Cpe01g02120 . . . . . . . . . . . . . . . . . Chy03g00502 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003827 2 1 1 2 2 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46015 PF13646 HEAT_2 5.20E-15 CL0020 Cone TF