Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1499 ATGTCATTCCGAAGTATAATCCGTGATGTGAGAGATGGGTTTGGAAGCTTATCAAGAAGAAGTTTTGAGGTGAGGCTATCTGGCCGCCACAAGGGTAAATATCATGGATCAGTACATGAGCTACATGATCCGAATCTGATAATCCAGACGAGCAGTTGGGCTAGTCTTCCACCTGAACTATTGCAAGATGTAATAAAAAGGCTAGAGGCAAGCGAAAGTACATGGCCAGCTAGAAAACATGTCGTAGCTTGTGCCGCTGTTTGTCAGTCTTGGAGAGAAATGTGCAAAGAAATTGTCAGAAATCCGGAAATTTCCGGAAAGATTACCTTCCCGGTCTCCTTGAAACAGCCAGGGCCAAGGGATGGAACCATTCAGTGCTTCATTAAGAGGGATAAATCTAGTCTAACTTACCATCTTTTCCTTTGCCTTAGCCCTGCTTTACTTGTTGAGAACGGGAAATTCCTTCTTTCTGCAAAACGAACAAGGAGAACTACTTGCACTGAGTATGTTATCTCCATGGATGCTGATAACATATCAAGATCAAGCAGCACTTACATTGGTAAAGTAAGGTCGAATTTTCTAGGCACAAAATTCATCATTTATGACACGCAGCCTCCCTACAGCAACTCCAACATATCTCCATCTGGCAGAAGCCATAGATTCCACTCGAAAAAAGTATCCCCCAAAGTACCCACAGGGAATTACAGCATTGCCCAAATCATGTACGAGTTGAACGTCCTCGGGACGAGGGGCCCACGCAGGATGCACTGCACCATGCACTCCATCCCGGCCTCAGCTGTAGAGCCAAATGGCACTGTTCCAGGCCAGCCTGAGCTCCTCCCTCGCTCCCTACTTGAGGACTCGTTCCGAAGCATCTCCTTCTCGAAATCTGTTGATCAATCAACAGAATTTAGCAGTTCTAGATTCTCTGACATTGTTGGTTTGCATGATGAGGAACAAGGGAAGGGGGAGACAAGACCCTTGATTCTTCGGAACAAGGCGCCTAGGTGGCATGAGCAGTTGCAGTGTTGGTGTCTTAATTTCCGCGGTAGAGTAACTATCGCCTCCATTAAGAACTTTCAGTTGATAGCTGCAACAACAACAACAACAGCGGCACAGCCAACTATGGCTCAACCTGGCCAACCTGTTACCCAACCCGCTGCCCCAACTGACCATGACAAGATTATTCTTCAGTTTGGTAAGGCACAGAGGGAAAGCTACCCTTGTTCCCTTCATGCACAAGTCTTTACGGTAAAGTGGCACCCAACTAGGTCCAAATCAATGGATGGAAGAAACAAGCACGGAGACTTTTGTAATGGTAAAAAGAGAATAATTGGGTAA 1341 46.01 MSFRSIIRDVRDGFGSLSRRSFEVRLSGRHKGKYHGSVHELHDPNLIIQTSSWASLPPELLQDVIKRLEASESTWPARKHVVACAAVCQSWREMCKEIVRNPEISGKITFPVSLKQPGPRDGTIQCFIKRDKSSLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKVRSNFLGTKFIIYDTQPPYSNSNISPSGRSHRFHSKKVSPKVPTGNYSIAQIMYELNVLGTRGPRRMHCTMHSIPASAVEPNGTVPGQPELLPRSLLEDSFRSISFSKSVDQSTEFSSSRFSDIVGLHDEEQGKGETRPLILRNKAPRWHEQLQCWCLNFRGRVTIASIKNFQLIAATTTTTAAQPTMAQPGQPVTQPAAPTDHDKIILQFGKAQRESYPCSLHAQVFTVKWHPTRSKSMDGRNKHGDFCNGKKRIIG 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11673097 11677394 - Conep04aG0155100.1 Cone4ag1499 436477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1499 446 CDD F-box_AtTLP-like 53 97 - -
Cone4ag1499 446 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515(InterPro)
Cone4ag1499 446 PANTHER TUBBY-RELATED 38 407 - -
Cone4ag1499 446 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Cone4ag1499 446 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cone4ag1499 446 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cone4ag1499 446 PRINTS Tubby superfamily signature 392 411 IPR000007 -
Cone4ag1499 446 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Cone4ag1499 446 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cone4ag1499 446 FunFam Tubby-like F-box protein 48 101 - -
Cone4ag1499 446 Pfam Tub family 114 407 IPR000007 -
Cone4ag1499 446 Gene3D Tubby Protein; Chain A 112 415 IPR025659 -
Cone4ag1499 446 SUPERFAMILY Tubby C-terminal domain-like 102 407 IPR025659 -
Cone4ag1499 446 Gene3D - 48 101 - -
Cone4ag1499 446 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1499 Cone-Chr4:11673097 Cone8ag0970 Cone-Chr8:9140265 2.38E-210 dispersed
Cone17ag0784 Cone-Chr17:6042285 Cone4ag1499 Cone-Chr4:11673097 9.66E-215 wgd
Cone20ag0378 Cone-Chr20:1761994 Cone4ag1499 Cone-Chr4:11673097 2.96E-213 wgd
Cone4ag1499 Cone-Chr4:11673097 Cone7ag1448 Cone-Chr7:10255177 9.63E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46016 PF00644 PARP 7.20E-74 CL0084 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1499 K19600 - cit:102613939 659.833