Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1501 ATGGAGGGTGGTGACCGGAGTTCTTTGGAAAGCTCCGGCGAGGCCGTAGAGGTGGGTGATGCGCCTCGAGATCATGACGACGAAGGTGGTACTTTTGGTGCACGTGGTGGTGTTGGTGCTGGTTCGAAATCCGGCGAAGAAGATAAGGGCGGAGGAGGTGATCAGTATGAATATGAGGGTCAGGACAAGACCAATTATGTCGGAAACCGCTGGCCTCGTCAAGAAACATTGGCTTTATTGAAGATAAGGTCCGACATGGATACTGTTTTCCGAGACTCAAGTCTCAAAGGTCCATTATGGGAAGAAGTTTCAAGGAAGCTAGCAGAGCTTGGTTACAATCGAACTGCAAAGAAATGCAAGGAGAAATTCGAGAACGTGTACAAGTACCACAAAAGAACAAAAGAAGGCAGAAATGGGAAACATGAAGGAAAAGCGTATCGTTTTTTCGATCAATTAGAAGCTTTTGATCATCATCAACATCGTCAGCATCAGCCTTCTCTTCCAATATCGTCAAAACCTGCTGTGTTTTCACAAGCTCTTTCAATGGTAGTCAGACCTAATTGGACCAACCCTACTGTCAGTACTGTTCCATCAAATTTGCACCCTACAAATAATAATACTTCATCACCAAACCATGAAGCGTTCATAAGCCCCGCAATCCCTTCAAATCCTAAAGTACAGAACAATCTATCTCGTAGTAATAATAACATCCCTTCTTCATTTGCAAACATGTCAGCAAATCTTTTCTCGAGTTCGCCTTCGTCAACTGCATCGGACGAAGAACTCGGAGGCCGGAGTAGGAGAAAGCGGAAATGGAAGGATTTCTTTGTAAAGCTGACAAAGGGGGTGATAAAGAAACAAGAGGATTTGCAAATTAAATTGTTAGAAGCTTTAGAGAAAATAGAGCACCAGCGGATTGTAAGAGAAGACACTTGGAAAATGCAAGAGGTGGCTAGAGTTAATAGGGAGCATGAAATTTTAGTTCAAGAAAGGTCCAAAGCGGCCGCTAAGGATACAGCCGTAATCGCATTTTTACACAAGATATCGGACCAGCATAGCCCCGAACAACCTAGCAGTGCTCTTGATCCACCACTGCTACCGCCGCCACCACCACCACTCGGTCCGCCACAGTCTCGACCTAGACAGCCGCCAGCTCTAAATCAAGCGGGGGTGCATTTAGACATCCAGAAAGTGGGTGTTAGGAATGGTGATCGTAATGCGAGTTCTTCAAGATGGCCAAAAGCGGAAGTAGAAGCATTAATAAGGCTTAGGACGGAGCTAGAATTGAAGTATCAAGAAAATGGACCGAAAGGGCCTCTGTGGGAGGACATATCAGCCGCTATGAGAAAGCTGGGATACAATCGGAGCTCGAAGAGATGCAAAGAGAAATGGGAGAACATTAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAAGAGGCATGAGGATTCCAAAACTTGTCCATATTTTCACCAGTTGGAAGCAATGTACAAAGAGAAGATGGTCAATAAGAGTAGTAGTGACAATATTTTATGCTTCACTAACTATAATCAAATGCAGCAGCCATTAATGGTCCAGCCGGAGCAACAGTGGCCACTTCCACAAGGAAAGTCATCAAACGAGGAAGAACTAAATCGAGAGGAGGAGGAAGATGATGATGAAGAAGAAGAATCACATGATGATGATATTGAAGGAGAAGAAGAAGAAGACGAAGACAGAGATAGTGAGGAAGAACATGATGAAATCACTACCTTTGAAATTGTTGCAAACAAACAATCCTCAATGAGTGCTACAATGGAGTGA 1806 44.02 MEGGDRSSLESSGEAVEVGDAPRDHDDEGGTFGARGGVGAGSKSGEEDKGGGGDQYEYEGQDKTNYVGNRWPRQETLALLKIRSDMDTVFRDSSLKGPLWEEVSRKLAELGYNRTAKKCKEKFENVYKYHKRTKEGRNGKHEGKAYRFFDQLEAFDHHQHRQHQPSLPISSKPAVFSQALSMVVRPNWTNPTVSTVPSNLHPTNNNTSSPNHEAFISPAIPSNPKVQNNLSRSNNNIPSSFANMSANLFSSSPSSTASDEELGGRSRRKRKWKDFFVKLTKGVIKKQEDLQIKLLEALEKIEHQRIVREDTWKMQEVARVNREHEILVQERSKAAAKDTAVIAFLHKISDQHSPEQPSSALDPPLLPPPPPPLGPPQSRPRQPPALNQAGVHLDIQKVGVRNGDRNASSSRWPKAEVEALIRLRTELELKYQENGPKGPLWEDISAAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKKRHEDSKTCPYFHQLEAMYKEKMVNKSSSDNILCFTNYNQMQQPLMVQPEQQWPLPQGKSSNEEELNREEEEDDDEEEESHDDDIEGEEEEDEDRDSEEEHDEITTFEIVANKQSSMSATME 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11681355 11683985 + Conep04aG0155300.1 Cone4ag1501 436479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1501 601 CDD GT1 410 475 - -
Cone4ag1501 601 SMART sant 408 470 IPR001005 -
Cone4ag1501 601 SMART sant 67 129 IPR001005 -
Cone4ag1501 601 MobiDBLite consensus disorder prediction 545 580 - -
Cone4ag1501 601 MobiDBLite consensus disorder prediction 587 601 - -
Cone4ag1501 601 PANTHER FI21293P1 53 553 - -
Cone4ag1501 601 ProSiteProfiles Myb-like domain profile. 63 127 IPR001005 -
Cone4ag1501 601 Gene3D - 71 132 - -
Cone4ag1501 601 Gene3D - 412 473 - -
Cone4ag1501 601 MobiDBLite consensus disorder prediction 360 382 - -
Cone4ag1501 601 MobiDBLite consensus disorder prediction 17 31 - -
Cone4ag1501 601 FunFam Trihelix transcription factor GT-2 412 473 - -
Cone4ag1501 601 FunFam Trihelix transcription factor GT-2 71 132 - -
Cone4ag1501 601 Coils Coil 284 304 - -
Cone4ag1501 601 ProSiteProfiles Myb-like domain profile. 404 468 IPR001005 -
Cone4ag1501 601 Coils Coil 538 558 - -
Cone4ag1501 601 MobiDBLite consensus disorder prediction 194 237 - -
Cone4ag1501 601 CDD GT1 69 134 - -
Cone4ag1501 601 MobiDBLite consensus disorder prediction 530 601 - -
Cone4ag1501 601 MobiDBLite consensus disorder prediction 1 67 - -
Cone4ag1501 601 Pfam Myb/SANT-like DNA-binding domain 410 497 IPR044822 -
Cone4ag1501 601 Pfam Myb/SANT-like DNA-binding domain 69 154 IPR044822 -
Cone4ag1501 601 MobiDBLite consensus disorder prediction 351 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1501 Cone-Chr4:11681355 Cone7ag1447 Cone-Chr7:10247382 9.63E-296 dispersed
Cone4ag1501 Cone-Chr4:11681355 Cone4ag1502 Cone-Chr4:11686614 7.08E-127 tandem
Cone12ag0048 Cone-Chr12:281499 Cone4ag1501 Cone-Chr4:11681355 3.60E-123 wgd
Cone4ag1501 Cone-Chr4:11681355 Cone7ag1446 Cone-Chr7:10239024 2.97E-123 wgd
Cone4ag1501 Cone-Chr4:11681355 Cone8ag0052 Cone-Chr8:272598 1.15E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46017 PF03195 LOB 7.70E-37 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1501 - - - 0.0