Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1501 | ATGGAGGGTGGTGACCGGAGTTCTTTGGAAAGCTCCGGCGAGGCCGTAGAGGTGGGTGATGCGCCTCGAGATCATGACGACGAAGGTGGTACTTTTGGTGCACGTGGTGGTGTTGGTGCTGGTTCGAAATCCGGCGAAGAAGATAAGGGCGGAGGAGGTGATCAGTATGAATATGAGGGTCAGGACAAGACCAATTATGTCGGAAACCGCTGGCCTCGTCAAGAAACATTGGCTTTATTGAAGATAAGGTCCGACATGGATACTGTTTTCCGAGACTCAAGTCTCAAAGGTCCATTATGGGAAGAAGTTTCAAGGAAGCTAGCAGAGCTTGGTTACAATCGAACTGCAAAGAAATGCAAGGAGAAATTCGAGAACGTGTACAAGTACCACAAAAGAACAAAAGAAGGCAGAAATGGGAAACATGAAGGAAAAGCGTATCGTTTTTTCGATCAATTAGAAGCTTTTGATCATCATCAACATCGTCAGCATCAGCCTTCTCTTCCAATATCGTCAAAACCTGCTGTGTTTTCACAAGCTCTTTCAATGGTAGTCAGACCTAATTGGACCAACCCTACTGTCAGTACTGTTCCATCAAATTTGCACCCTACAAATAATAATACTTCATCACCAAACCATGAAGCGTTCATAAGCCCCGCAATCCCTTCAAATCCTAAAGTACAGAACAATCTATCTCGTAGTAATAATAACATCCCTTCTTCATTTGCAAACATGTCAGCAAATCTTTTCTCGAGTTCGCCTTCGTCAACTGCATCGGACGAAGAACTCGGAGGCCGGAGTAGGAGAAAGCGGAAATGGAAGGATTTCTTTGTAAAGCTGACAAAGGGGGTGATAAAGAAACAAGAGGATTTGCAAATTAAATTGTTAGAAGCTTTAGAGAAAATAGAGCACCAGCGGATTGTAAGAGAAGACACTTGGAAAATGCAAGAGGTGGCTAGAGTTAATAGGGAGCATGAAATTTTAGTTCAAGAAAGGTCCAAAGCGGCCGCTAAGGATACAGCCGTAATCGCATTTTTACACAAGATATCGGACCAGCATAGCCCCGAACAACCTAGCAGTGCTCTTGATCCACCACTGCTACCGCCGCCACCACCACCACTCGGTCCGCCACAGTCTCGACCTAGACAGCCGCCAGCTCTAAATCAAGCGGGGGTGCATTTAGACATCCAGAAAGTGGGTGTTAGGAATGGTGATCGTAATGCGAGTTCTTCAAGATGGCCAAAAGCGGAAGTAGAAGCATTAATAAGGCTTAGGACGGAGCTAGAATTGAAGTATCAAGAAAATGGACCGAAAGGGCCTCTGTGGGAGGACATATCAGCCGCTATGAGAAAGCTGGGATACAATCGGAGCTCGAAGAGATGCAAAGAGAAATGGGAGAACATTAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAAGAGGCATGAGGATTCCAAAACTTGTCCATATTTTCACCAGTTGGAAGCAATGTACAAAGAGAAGATGGTCAATAAGAGTAGTAGTGACAATATTTTATGCTTCACTAACTATAATCAAATGCAGCAGCCATTAATGGTCCAGCCGGAGCAACAGTGGCCACTTCCACAAGGAAAGTCATCAAACGAGGAAGAACTAAATCGAGAGGAGGAGGAAGATGATGATGAAGAAGAAGAATCACATGATGATGATATTGAAGGAGAAGAAGAAGAAGACGAAGACAGAGATAGTGAGGAAGAACATGATGAAATCACTACCTTTGAAATTGTTGCAAACAAACAATCCTCAATGAGTGCTACAATGGAGTGA | 1806 | 44.02 | MEGGDRSSLESSGEAVEVGDAPRDHDDEGGTFGARGGVGAGSKSGEEDKGGGGDQYEYEGQDKTNYVGNRWPRQETLALLKIRSDMDTVFRDSSLKGPLWEEVSRKLAELGYNRTAKKCKEKFENVYKYHKRTKEGRNGKHEGKAYRFFDQLEAFDHHQHRQHQPSLPISSKPAVFSQALSMVVRPNWTNPTVSTVPSNLHPTNNNTSSPNHEAFISPAIPSNPKVQNNLSRSNNNIPSSFANMSANLFSSSPSSTASDEELGGRSRRKRKWKDFFVKLTKGVIKKQEDLQIKLLEALEKIEHQRIVREDTWKMQEVARVNREHEILVQERSKAAAKDTAVIAFLHKISDQHSPEQPSSALDPPLLPPPPPPLGPPQSRPRQPPALNQAGVHLDIQKVGVRNGDRNASSSRWPKAEVEALIRLRTELELKYQENGPKGPLWEDISAAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKKRHEDSKTCPYFHQLEAMYKEKMVNKSSSDNILCFTNYNQMQQPLMVQPEQQWPLPQGKSSNEEELNREEEEDDDEEEESHDDDIEGEEEEDEDRDSEEEHDEITTFEIVANKQSSMSATME | 601 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11681355 | 11683985 | + | Conep04aG0155300.1 | Cone4ag1501 | 436479 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1501 | 601 | CDD | GT1 | 410 | 475 | - | - | |
Cone4ag1501 | 601 | SMART | sant | 408 | 470 | IPR001005 | - | |
Cone4ag1501 | 601 | SMART | sant | 67 | 129 | IPR001005 | - | |
Cone4ag1501 | 601 | MobiDBLite | consensus disorder prediction | 545 | 580 | - | - | |
Cone4ag1501 | 601 | MobiDBLite | consensus disorder prediction | 587 | 601 | - | - | |
Cone4ag1501 | 601 | PANTHER | FI21293P1 | 53 | 553 | - | - | |
Cone4ag1501 | 601 | ProSiteProfiles | Myb-like domain profile. | 63 | 127 | IPR001005 | - | |
Cone4ag1501 | 601 | Gene3D | - | 71 | 132 | - | - | |
Cone4ag1501 | 601 | Gene3D | - | 412 | 473 | - | - | |
Cone4ag1501 | 601 | MobiDBLite | consensus disorder prediction | 360 | 382 | - | - | |
Cone4ag1501 | 601 | MobiDBLite | consensus disorder prediction | 17 | 31 | - | - | |
Cone4ag1501 | 601 | FunFam | Trihelix transcription factor GT-2 | 412 | 473 | - | - | |
Cone4ag1501 | 601 | FunFam | Trihelix transcription factor GT-2 | 71 | 132 | - | - | |
Cone4ag1501 | 601 | Coils | Coil | 284 | 304 | - | - | |
Cone4ag1501 | 601 | ProSiteProfiles | Myb-like domain profile. | 404 | 468 | IPR001005 | - | |
Cone4ag1501 | 601 | Coils | Coil | 538 | 558 | - | - | |
Cone4ag1501 | 601 | MobiDBLite | consensus disorder prediction | 194 | 237 | - | - | |
Cone4ag1501 | 601 | CDD | GT1 | 69 | 134 | - | - | |
Cone4ag1501 | 601 | MobiDBLite | consensus disorder prediction | 530 | 601 | - | - | |
Cone4ag1501 | 601 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
Cone4ag1501 | 601 | Pfam | Myb/SANT-like DNA-binding domain | 410 | 497 | IPR044822 | - | |
Cone4ag1501 | 601 | Pfam | Myb/SANT-like DNA-binding domain | 69 | 154 | IPR044822 | - | |
Cone4ag1501 | 601 | MobiDBLite | consensus disorder prediction | 351 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag1501 | Cone-Chr4:11681355 | Cone7ag1447 | Cone-Chr7:10247382 | 9.63E-296 | dispersed | |
Cone4ag1501 | Cone-Chr4:11681355 | Cone4ag1502 | Cone-Chr4:11686614 | 7.08E-127 | tandem | |
Cone12ag0048 | Cone-Chr12:281499 | Cone4ag1501 | Cone-Chr4:11681355 | 3.60E-123 | wgd | |
Cone4ag1501 | Cone-Chr4:11681355 | Cone7ag1446 | Cone-Chr7:10239024 | 2.97E-123 | wgd | |
Cone4ag1501 | Cone-Chr4:11681355 | Cone8ag0052 | Cone-Chr8:272598 | 1.15E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46017 | PF03195 | LOB | 7.70E-37 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1501 | - | - | - | 0.0 |