Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1502 ATGCTGGGGGAGTCAGGTAGTAGTGTTTTAGGCAGCTCGGTAGATGCCGTGGCGACAGCGGCAGCAGCAGCGACATCTCATCATCAACAGCATGATGGGAGCAGCGAGGGAGGCAATTGCGGCGGAGCGGCATCAAGTTCAGCTGAAGAAGATTTTACAAGAGCCGGAGGAGGAGAGAGAATTAGCGGCGGTTTTGGTGGAAATAGGTGGCCTAGACAAGAAACCTTAGCACTCTTGAAGATTCGGTCCGACATGGACGTGGCTTTCCGAGATGCAAGCGCCAAGGGTCCATTGTGGGATGAAGTTTCCAGGAAACTAGCAGAGCTTGGGTATCATCGAAACGCAAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCATAAAAGAACCAAAGAAGGCCGTAGTGGAAAACCCGATGGCAAGACTTATCGGTTCTTTGACCAGTTACAAGCCCTTGAAAATCAACCGCCACCCACCATTTTCCATGCAACTACTACCACTACTACTACTACGCCACAATATAATACACTACACCCTAAACCTCCACCTCAACAACCACAGGCGCCACCCCCACCTCCCCCTCTTACTACAGTGGCGGCACTACCTAACCCTCAAATACTTCCTCACATTAATCCTAGTACTGTTCCATCAACTTCACCTCAACCTATGCCCAGCATCCTCACTACATTACCTTCATTTCCACAACCTAACAACCCCGCAATATTTGCAAGGCCACCGCAACAGGCGGCACCACCGCCGGCCATAACCGCAAACCCTACAAATTCTTTCCAGCCAAGCAGTACTGTTCCGGTCCAGCCCTTTAGTTTCGCCAACATTTCTGCTGAACTCATTTCGAATTCTACCTCCTCTAACTCCTCCACGTCATCAGACGGTGAATTCTCAGAAGGGTCGGGCATCAGGCGAACCAGGAAGCGGAAATGGAAGGAATTTTTTGGGAGACTAATGAAGGAGGTGATTCAAAAGCAAGAAGACTTGCAGAAGAGATTCCTCAAAGCCATAGAGAAACGCGAGCATGAACGGATGGCGCGAGAAGAGGCTTGGAGAATTCAGGAAATGGCCAAGATCAGTAAAGAGCGCGAAATTCTAGCCCAAGAGAGATCAATGGCTGCCGCTAAGGATGCGGCCGTAATGGCATTTTTGCAAAAAGTAGCCGACCAACAACCGAACCAAAACCCGTCCGGTCAGGTCCACATCAACATTACGCAACAACAACCTCCTCAGCCAGCGCAAGCACCACCATCTCAAGCGGCAAGACTACAACAGGCCCCACCACCTCCTCCGCGACCAACAACTATTACTCATGTACTACCACAGCAGAAGACAGTTACAAGAGATCATCATCCAATTCCAAATAATGGGGATCATGATAATTTCATGATGATGTCCTCTATTAGCCCCTCAAGATGGCCAAAAGTTGAGGTTCAAGCATTGATCAAGTTACGGGCCGATCTCGACACCAAGTATCAAGAAAATGGGCCGAAGGGCCTGCTATGGGAGGAGATCTCAACCGCAATGAAAAAGCTCGGCTACAACCGGAACCCGAAAAGATGTAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAATAAGGAACGGCCCGAGGATTCAAAGACCTGCCCGTATTTTCACCAGCTCGACGCATTATATAAGGAGAAGAACAAGCTGTTTGAGAGTAGTACTACTGCTTCATCTAATAATCAAAGCACTAATTCGATGGCGGCTGCTCCAATGATGGTTCGGCCCGAGCAGCAATGGCCTCCGCAGCAAGAGATTGTCCAGCCCGAGTCGGGCAATGAGGATATGGAGAGTGAGGCATTAATGGATCAACAGCTTGGAGAGGGAGAAGAAGACGTTGATGATGATAGTGATGGGAGTCATAATGATGAGGAGGAGGAAGAAGAAAATGAGGGTGGTGGACATTATGAAATAGTGGCTAGCAAACCTGGTAATTCTTCGGTGGGTGCACCTGAGTGA 2019 48.84 MLGESGSSVLGSSVDAVATAAAAATSHHQQHDGSSEGGNCGGAASSSAEEDFTRAGGGERISGGFGGNRWPRQETLALLKIRSDMDVAFRDASAKGPLWDEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSGKPDGKTYRFFDQLQALENQPPPTIFHATTTTTTTTPQYNTLHPKPPPQQPQAPPPPPPLTTVAALPNPQILPHINPSTVPSTSPQPMPSILTTLPSFPQPNNPAIFARPPQQAAPPPAITANPTNSFQPSSTVPVQPFSFANISAELISNSTSSNSSTSSDGEFSEGSGIRRTRKRKWKEFFGRLMKEVIQKQEDLQKRFLKAIEKREHERMAREEAWRIQEMAKISKEREILAQERSMAAAKDAAVMAFLQKVADQQPNQNPSGQVHINITQQQPPQPAQAPPSQAARLQQAPPPPPRPTTITHVLPQQKTVTRDHHPIPNNGDHDNFMMMSSISPSRWPKVEVQALIKLRADLDTKYQENGPKGLLWEEISTAMKKLGYNRNPKRCKEKWENINKYFKKVKESNKERPEDSKTCPYFHQLDALYKEKNKLFESSTTASSNNQSTNSMAAAPMMVRPEQQWPPQQEIVQPESGNEDMESEALMDQQLGEGEEDVDDDSDGSHNDEEEEEENEGGGHYEIVASKPGNSSVGAPE 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11686614 11689676 - Conep04aG0155400.1 Cone4ag1502 436480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1502 672 PRINTS Proline rich extensin signature 413 438 - -
Cone4ag1502 672 PRINTS Proline rich extensin signature 188 204 - -
Cone4ag1502 672 PRINTS Proline rich extensin signature 243 264 - -
Cone4ag1502 672 PRINTS Proline rich extensin signature 173 185 - -
Cone4ag1502 672 PRINTS Proline rich extensin signature 215 227 - -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 171 199 - -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 23 42 - -
Cone4ag1502 672 CDD GT1 68 133 - -
Cone4ag1502 672 SMART sant 474 536 IPR001005 -
Cone4ag1502 672 SMART sant 66 128 IPR001005 -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 412 463 - -
Cone4ag1502 672 FunFam Trihelix transcription factor GT-2 478 539 - -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 288 309 - -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 596 672 - -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 288 304 - -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 415 441 - -
Cone4ag1502 672 Gene3D - 478 539 - -
Cone4ag1502 672 Gene3D - 70 131 - -
Cone4ag1502 672 CDD GT1 476 541 - -
Cone4ag1502 672 FunFam Trihelix transcription factor GT-2 70 131 - -
Cone4ag1502 672 PANTHER FI21293P1 35 602 - -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 178 199 - -
Cone4ag1502 672 Pfam Myb/SANT-like DNA-binding domain 68 154 IPR044822 -
Cone4ag1502 672 Pfam Myb/SANT-like DNA-binding domain 476 563 IPR044822 -
Cone4ag1502 672 ProSiteProfiles Myb-like domain profile. 68 126 IPR001005 -
Cone4ag1502 672 ProSiteProfiles Myb-like domain profile. 470 534 IPR001005 -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 19 69 - -
Cone4ag1502 672 MobiDBLite consensus disorder prediction 624 652 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0048 Cone-Chr12:281499 Cone4ag1502 Cone-Chr4:11686614 1.17E-120 dispersed
Cone12ag0575 Cone-Chr12:4259062 Cone4ag1502 Cone-Chr4:11686614 6.62E-97 dispersed
Cone4ag1502 Cone-Chr4:11686614 Cone7ag1446 Cone-Chr7:10239024 4.19E-286 dispersed
Cone4ag1501 Cone-Chr4:11681355 Cone4ag1502 Cone-Chr4:11686614 7.08E-127 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46018 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1502 - - - 0.0