Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1513 ATGATGAAATTCGTGTCAAGCAGTCAAGTCATTCTTCCTCTTCTTATTCTTCTTCTGTTGGTTCTTAACTTCTTGTTTCTGTTTCCAACTAATGTCTCTGCTTTGAACCAAGAAGGTCTGGCTCTACTTTCATGGCTTTCAAGCTTCAACTCCTCTTCCTCTTCTGCTGCGTTCTTCTCGTCATGGAATCCAACTCATAATACTCCGTGTAAATGGGAATTCATCAAATGCTCAAGTAACGGATTTGTCTCCGAGATATCTATTTCGTCTGTCAATCTTCCTACTAGCTTTCCTACTCAGCTTATTAGCTTCAACTTTCTCACCACACTTGTACTCTCCAATGGCAACCTCACCGGAAAAGTCCCGACTGCAATTGCAAACTTGTCTTCTTCATTGGTCACCTTGGACCTCAGTTTCAATTCTCTAACGGGAAAAATCCCGGACGAAATAGGTAAGCTTTCCAAACTGCAGTTCTTGGCACTGAATTCTAATTCCTTCCAAGGCGGGATTCCAATCCAAATCGGGAACTGTTCGAATCTTAGACGTCTTGAACTGTTTGATAACTTGCTGTCTGGAAAGATTCCGTCAGAAATGGGCCGTCTGTGGGCCTTAGAGGTACTTCGAGCGGGTGGCAATGCCGGGTTTTACGGTGAAATTCCAGACCAAATATCAAACTGTAAAGCACTTGCTTTTCTCGGTCTGGCAGATACCGGAATCTCGGGGAAGATTCCGAAGAATCTGGGATCTCTTCAGAATCTGAAAACTATTGCAATCTACACAGCAAACCTTACAGGTCATATCCCGCCAGAAATCGGTAACTGTTCTGCCTTGGAAAATCTGTTTCTTTATCAAAACCAACTTTCCGGGAAAATCCCTGAAGTGTTGGGTCTGATGAAAAATCTCAGAAGGGTGTTATTATGGCAGAACGATCTAAGTGGAAGCATTCCAGAATCTTTTGGAAATGCTTCTGATTTGATAGTGATCGATTTCTCATTGAATTCTTTAAGTGGTGAGATTCCTGCATCAATTGCTAATTTAGTTGCATTGGAGGAGATTCTACTGTCAGGGAATCAGATTTCTGGTCGGATACCGTCATTTTTCGGCAACTTTTCTGTTCTGAAGCAACTTGAATTGGACAACAACAGATTTTCGGGTGAAATCCCGGCTTCAATGGGGCAGCTAAAGCAGCTCTTTCTTTTCTATGCATGGCAGAATTGGCTCCATGGAAGCATACCCTATGAGTTAAGCGATTGTGAAAAACTTGAAGCACTTGATCTATCTCACAATTCCCTTACCGGATCAATTCCGAATTCTCTCTTTAATCTCAAGAACTTAAGCCAATTACTACTGATATCAAACAAGCTTTCAGGTGAAATTCCAAGAGATATAGGAAATTGCACCAGCTTGATCCGTTTGCGGCTTGGATCAAACAATTTTACGGGTCAAATTCCATCAGAAATTGGACTCCTTCATAGCTTGAGCTTCTTGGAATTATCAGAAAATCACTTGACAGGCCAAATCCCGTCTGAATTCGGCAACTGCACTGAGCTAGAAATGATCGATTTACACAAAAATCAGCTCCAAGGAATGATACCTTCATCTCTGGCTTTTCTATCTAAGCTTAATGTTTTAGACCTTTCCATGAACATAATCACAAGCAGCATTCCTGAAAATCTTGGAATGCTTACATCCCTCAACAAATTGGTCGTAAGTAATAATCAAATTTCCGGTACAATTCCGACGTCATTAGGCCTTTGTAAGGATTTGCAATTGCTTGATTTAAGCAGGAATAGAATTTCCGGTTCAATCCCGGTTGAGATTGGCTGGCTACAAGGATTAGATATCCTCATGAATCTGAGCTGGAATTCCTTAACGCATCCCATCCCGGAAAGCTTTTCGAGACTCTCAAAGCTTTCCAACTTGGATCTCTCTCACAACATGCTAACAGGCAACCTTAACGGGCTCAAAGATCTAGACAACCTGGTATTCCTTGACGTTTCATATAACAACTTTTCGGGTATCCTTCCTGATTCCAAGTTATTTGAAAATCTTCCGGCCAGTGCATTTTCCGGCAACGAAAAGCTTTGTATTAAGAGAAATGAGTGCCATTCAAGTAACAGAAAATCCACCCAAGAAAATGTTATCGGTCTTGCTTTCCTTATTCTTGTTGCAACTGCATTGACTATACTTGTTGGAGTAATTCTCTTCATCAAAGTTTATGGATCCGGATTCGGGAAAAAAACCCGTGAAGTAAATGGCTTGAATTGGGATTTAACCCAATTTCAAAAACTCAACTTTTCAGTAGATGATATTGTCACAAGGCTTTCAGAATCAAACATTGTCGGAAAGGGTATTTCCGGAATTGTTTTTAGAGTCGAAACTCCAACAAAACAGGTTATTGCAGTGAAGAAGCTATGGCCTTTAAAGAACGGTGAGGTTCTGGAAAATGATATGTTTTTTACAGAAGTTCAGACTCTTGGATCGATAAGGCATAGAAACATAGTGAGACTTCTGGGTTGTTGTAATAACGGTAAAACCAGACTTCTCCTGTTTGATTATATCAGTAATGGGAGTTTATCAAGTTTGCTTCATCAGAAGAAGCTGTTCTTGGATTGGGATCAAAGGTACAAGATCATACTAGGAGCTGCTCATGGTTTGGCTTATCTTCACCATGATTCTATACCTCCTATCCTACATAGAGACATCAAGTCAAACAATATCTTGATCGGATCACAATTCGAATCTTTCCTATCAGATTTCGGGTTAGCCAAGCTTTTAGATTCTTCGGAATGTTCTAGAACAGCTTCCAATACAGTTGCAGGCTCTTACGGATACATAGCTCCAGAACATGGGTACAGCTTGAGGATAACAGAGAAAAGTGATGTATATAGCTATGGGGTTGTACTACTAGAGGTGTTAACAGGGAAGGAGCCGGCAGATAGCAGCATTCCGGACGGAGCCCACATTGTGAAATGGATCAGCCGGGAAGTTAGAAAGAGGAAGAGAGAGATTGCTTCGATTCTTGATCAGCAATTAGTAGTGCAATGTGGAGAACATATTCAAGAAATGGTTCAAGTTTTTGGGGTTGCTCTTCTTTGTGTTAATTCTTGTCCAGAAGAAAGGCCAACCATGAAAGATGTAACAGCCATGCTTATTGAGATCCGGCATGAGAATAACGAAGATTTGGAGAAGCCGGGTCTACTTAGAAGATTGGGTGACGTTGTGAACCCGAAAGCAGCAGTTTATTGTTCGAGTTTCTCTAGATCGTCTGAGCCCTTAATTAGATCACCACCTTCTTCACTTCCATAA 3309 41.04 MMKFVSSSQVILPLLILLLLVLNFLFLFPTNVSALNQEGLALLSWLSSFNSSSSSAAFFSSWNPTHNTPCKWEFIKCSSNGFVSEISISSVNLPTSFPTQLISFNFLTTLVLSNGNLTGKVPTAIANLSSSLVTLDLSFNSLTGKIPDEIGKLSKLQFLALNSNSFQGGIPIQIGNCSNLRRLELFDNLLSGKIPSEMGRLWALEVLRAGGNAGFYGEIPDQISNCKALAFLGLADTGISGKIPKNLGSLQNLKTIAIYTANLTGHIPPEIGNCSALENLFLYQNQLSGKIPEVLGLMKNLRRVLLWQNDLSGSIPESFGNASDLIVIDFSLNSLSGEIPASIANLVALEEILLSGNQISGRIPSFFGNFSVLKQLELDNNRFSGEIPASMGQLKQLFLFYAWQNWLHGSIPYELSDCEKLEALDLSHNSLTGSIPNSLFNLKNLSQLLLISNKLSGEIPRDIGNCTSLIRLRLGSNNFTGQIPSEIGLLHSLSFLELSENHLTGQIPSEFGNCTELEMIDLHKNQLQGMIPSSLAFLSKLNVLDLSMNIITSSIPENLGMLTSLNKLVVSNNQISGTIPTSLGLCKDLQLLDLSRNRISGSIPVEIGWLQGLDILMNLSWNSLTHPIPESFSRLSKLSNLDLSHNMLTGNLNGLKDLDNLVFLDVSYNNFSGILPDSKLFENLPASAFSGNEKLCIKRNECHSSNRKSTQENVIGLAFLILVATALTILVGVILFIKVYGSGFGKKTREVNGLNWDLTQFQKLNFSVDDIVTRLSESNIVGKGISGIVFRVETPTKQVIAVKKLWPLKNGEVLENDMFFTEVQTLGSIRHRNIVRLLGCCNNGKTRLLLFDYISNGSLSSLLHQKKLFLDWDQRYKIILGAAHGLAYLHHDSIPPILHRDIKSNNILIGSQFESFLSDFGLAKLLDSSECSRTASNTVAGSYGYIAPEHGYSLRITEKSDVYSYGVVLLEVLTGKEPADSSIPDGAHIVKWISREVRKRKREIASILDQQLVVQCGEHIQEMVQVFGVALLCVNSCPEERPTMKDVTAMLIEIRHENNEDLEKPGLLRRLGDVVNPKAAVYCSSFSRSSEPLIRSPPSSLP 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11756834 11760351 + Conep04aG0156500.1 Cone4ag1513 436491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1513 1102 SUPERFAMILY Protein kinase-like (PK-like) 770 1057 IPR011009 -
Cone4ag1513 1102 Gene3D Ribonuclease Inhibitor 156 246 IPR032675 -
Cone4ag1513 1102 ProSitePatterns Protein kinases ATP-binding region signature. 781 809 IPR017441 GO:0005524(InterPro)
Cone4ag1513 1102 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 ProSiteProfiles Protein kinase domain profile. 775 1059 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1513 1102 ProSiteProfiles Leucine-rich repeat profile. 420 442 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 420 706 - -
Cone4ag1513 1102 Pfam Leucine Rich Repeat 468 488 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 Pfam Leucine Rich Repeat 564 584 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 Pfam Leucine Rich Repeat 373 394 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 Pfam Leucine Rich Repeat 660 678 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 Pfam Leucine Rich Repeat 420 442 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 Pfam Leucine Rich Repeat 492 514 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 Pfam Leucine Rich Repeat 589 608 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 SUPERFAMILY L domain-like 404 696 - -
Cone4ag1513 1102 ProSiteProfiles Leucine-rich repeat profile. 637 659 IPR001611 GO:0005515(InterPro)
Cone4ag1513 1102 Pfam Leucine rich repeat N-terminal domain 35 78 IPR013210 -
Cone4ag1513 1102 SUPERFAMILY L domain-like 63 407 - -
Cone4ag1513 1102 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 571 1048 IPR052592 -
Cone4ag1513 1102 Gene3D Ribonuclease Inhibitor 418 706 IPR032675 -
Cone4ag1513 1102 Gene3D Ribonuclease Inhibitor 250 417 IPR032675 -
Cone4ag1513 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 751 853 - -
Cone4ag1513 1102 Gene3D Transferase(Phosphotransferase) domain 1 854 1067 - -
Cone4ag1513 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 35 212 - -
Cone4ag1513 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 854 1067 - -
Cone4ag1513 1102 PRINTS Leucine-rich repeat signature 421 434 - -
Cone4ag1513 1102 PRINTS Leucine-rich repeat signature 635 648 - -
Cone4ag1513 1102 SMART LRR_typ_2 346 369 IPR003591 -
Cone4ag1513 1102 SMART LRR_typ_2 562 586 IPR003591 -
Cone4ag1513 1102 SMART LRR_typ_2 153 177 IPR003591 -
Cone4ag1513 1102 SMART LRR_typ_2 658 683 IPR003591 -
Cone4ag1513 1102 SMART LRR_typ_2 538 561 IPR003591 -
Cone4ag1513 1102 SMART LRR_typ_2 370 394 IPR003591 -
Cone4ag1513 1102 SMART LRR_typ_2 490 514 IPR003591 -
Cone4ag1513 1102 SMART LRR_typ_2 298 321 IPR003591 -
Cone4ag1513 1102 SMART LRR_typ_2 442 466 IPR003591 -
Cone4ag1513 1102 Gene3D Ribonuclease Inhibitor 38 152 IPR032675 -
Cone4ag1513 1102 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 213 337 - -
Cone4ag1513 1102 SMART serkin_6 775 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1513 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1513 1102 Gene3D Phosphorylase Kinase; domain 1 740 853 - -
Cone4ag1513 1102 Pfam Protein kinase domain 777 1048 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0228 Cone-Chr15:1072242 Cone4ag1513 Cone-Chr4:11756834 9.17E-82 dispersed
Cone15ag0229 Cone-Chr15:1073223 Cone4ag1513 Cone-Chr4:11756834 7.33E-24 dispersed
Cone16ag0085 Cone-Chr16:455027 Cone4ag1513 Cone-Chr4:11756834 2.16E-98 dispersed
Cone17ag0023 Cone-Chr17:175402 Cone4ag1513 Cone-Chr4:11756834 1.30E-70 dispersed
Cone17ag0766 Cone-Chr17:5805973 Cone4ag1513 Cone-Chr4:11756834 1.25E-88 dispersed
Cone20ag0356 Cone-Chr20:1593832 Cone4ag1513 Cone-Chr4:11756834 2.79E-105 dispersed
Cone2ag0922 Cone-Chr2:34990626 Cone4ag1513 Cone-Chr4:11756834 4.35E-95 dispersed
Cone4ag1513 Cone-Chr4:11756834 Cone7ag1472 Cone-Chr7:10357304 5.61E-95 dispersed
Cone4ag1513 Cone-Chr4:11756834 Cone6ag1296 Cone-Chr6:10408117 2.32E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82795 PF00190 Cupin_1 7.90E-21 CL0029 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1513 - - - 0.0