Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1516 ATGGCTGATCAGGAGGAGGAAGACCTCCGAGCGGCTCTGCGGATGAGTATGCAGCAGCACTCACCTCCTGAGCCGAAGCGGAGCAAGCCAAGGGACGCCATCTCTGTTGCTCCCACTAGTTTGCCTGAGGAGGCCCCGGAGGTGAAGAGCCGGCGGCTGCAGAGGGAGCTTATGGCAGCAGCTGCTGAGAAGAGGATGTCTGCTTTGAAGAGCTGTTCCACCTCTGTGCCTGTGGCTGTTGGTTCTCCATCCAAGGTGGTGAAGAAGGAGAAAGAATTGAGCGTGGAGGATGTGAATTTGGGGAAGGAGATTTCTGAGAAGGAAGCCAACCAGTTGTTTTTTATGCTGTTCGGAGCTGAGGTTTCTAAGGGAATTCTTGCGCAGTGGAGTAATCAAGGCATAAGGTTTAGCCCTGATCCTGAGACATCAATGGGCCTAGTGCAGCATGAAGGTGGGCCCTGTGGCGTCTTGGCAGCCATTCAAGCTTTTGTTCTCAAGTACCTTCTCTTCTTCCCAAATGAATCCGGTAAAGTTGCACCACAGAATTTTGGTGCAGGGAGATTGACTACAACCCAGTCTGATACACCAAATAATTTTGCTTCTCTTTCTGAAGATTCAAAAAAGAGAGCTCTTATTAGAAGCATGGCTGAGATATTGTTTTCATGTGGAAATAATAAGAGGGCTGTGATTGCCACTTTGAGTGTTATTGACAACAGTATAGAGGGGTCTGGAGCCTGTTCAAAAGATGAGATCATTGCAAAAGCCCTTGAAGGCCTTTCATTTGAATCAGATTCGGATTTGCAGAAAGTGCTAAGAGTTAGCCTGTACGCATCAGAAGCAAGTGTATTTCAGAGGATTGGCGAAATGATTCCTGTGTTCGAAAGTCGTATGGGTGCATTGTTATTCCTCATCTCTGCTTTACTTTCTAGAGGACTGGACTTAGTTCAAGCTGACAGGGACGATCCAAATCTCCCTCTTGTCACTGCTCCATTTGGACATGCTTCACAGGAAATTGTGAACCTCCTCCTTTGCGGGCAGGCGGTCCCTAATGTGTTTGATGGAAAGATGGATTTAGGTGGTGGAATGTCTTTGAAAGGCATATCTACAAGCGTGGAAGTTGGTTTCCTTACTCTTCTGGAATCTCTCAATTTCTGTAAAGTTGGTCAACATCTAAAATGCCCCAAATGGCCCATATGGGTGGTGGGAAGTGAGTCCCACTATACAGTCCTCTTTGCTCTTGAGACCTCTGTACAAGACGAGAACGAATTAGAAGAAAGAGGATCCCAAATACGGAAAGCTTTTGATGTGCAAGACCAGAGTGGAGGTGGTGGCTTCATTAGTGTAGAAGGCTTTCACCAAGTTCTCAAGGAAACAAACATAACACTTCCACCTGAGAAGCTTGATCAGCTTAGCAATGCAGGTTATATTGTATGGAGTGAGTTCTGGCAGATAATTCTAAACCTAGATAAGAGTGCTGGAGGAATGAAGGATTCCTCGGGATTGATGGGTAAAAAGATATTTGATCTTTATCACTTTAACGGGATTGCAAAGTCAGATCTGAATGGCAGCCTTGTAAATCCTGGGGGTGAGACTCCGATTCAAAGACCTAGGCTTACCAAATTGACAGTTTTGGTCCCTCCAAGGTGGACCCCAGAGGAGTTCATGGCAGATGTAGCTGTTTCATCTTCTTCGATCGGAAGTGAATCCAGCATTAAAGATGCTGAGGTGTCTAAACCCGAACCAACCCAGCATGCCCCTTTGGTTGATTGCATTAGAACGCGTTGGGCCCGAGCCGTTTGTAGTTGGGTTGGAGATCCCCCAAGTATAGTTTGA 1833 46.59 MADQEEEDLRAALRMSMQQHSPPEPKRSKPRDAISVAPTSLPEEAPEVKSRRLQRELMAAAAEKRMSALKSCSTSVPVAVGSPSKVVKKEKELSVEDVNLGKEISEKEANQLFFMLFGAEVSKGILAQWSNQGIRFSPDPETSMGLVQHEGGPCGVLAAIQAFVLKYLLFFPNESGKVAPQNFGAGRLTTTQSDTPNNFASLSEDSKKRALIRSMAEILFSCGNNKRAVIATLSVIDNSIEGSGACSKDEIIAKALEGLSFESDSDLQKVLRVSLYASEASVFQRIGEMIPVFESRMGALLFLISALLSRGLDLVQADRDDPNLPLVTAPFGHASQEIVNLLLCGQAVPNVFDGKMDLGGGMSLKGISTSVEVGFLTLLESLNFCKVGQHLKCPKWPIWVVGSESHYTVLFALETSVQDENELEERGSQIRKAFDVQDQSGGGGFISVEGFHQVLKETNITLPPEKLDQLSNAGYIVWSEFWQIILNLDKSAGGMKDSSGLMGKKIFDLYHFNGIAKSDLNGSLVNPGGETPIQRPRLTKLTVLVPPRWTPEEFMADVAVSSSSIGSESSIKDAEVSKPEPTQHAPLVDCIRTRWARAVCSWVGDPPSIV 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11766693 11770379 + Conep04aG0156800.1 Cone4ag1516 436494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1516 610 SMART uim 262 281 IPR003903 -
Cone4ag1516 610 SMART uim 4 23 IPR003903 -
Cone4ag1516 610 Gene3D - 407 491 - -
Cone4ag1516 610 SMART DUF4205_3 113 480 IPR025257 -
Cone4ag1516 610 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 4 23 IPR003903 -
Cone4ag1516 610 Pfam Deubiquitinating enzyme MINDY-3/4, conserved domain 115 424 IPR025257 -
Cone4ag1516 610 Pfam Ubiquitin interaction motif 4 20 IPR003903 -
Cone4ag1516 610 Pfam Ubiquitin interaction motif 264 275 IPR003903 -
Cone4ag1516 610 SUPERFAMILY EF-hand 428 487 IPR011992 -
Cone4ag1516 610 PANTHER UNCHARACTERIZED 58 609 IPR039785 GO:0004843(InterPro)|GO:0071108(InterPro)|GO:1990380(InterPro)|GO:1990380(PANTHER)
Cone4ag1516 610 MobiDBLite consensus disorder prediction 1 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1516 K22647 - - csv:101205336 920.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1516 Cone-Chr4:11766693 Cone7ag1436 Cone-Chr7:10183260 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1516 Cone7ag1436 . . . . . . . . . Bda13g01412 . . . . Sed07g2864 Cmo01g01047 . . . . . . . Bhi09g01470 Tan01g3339 Cmetu01g1740 . . Mch11g1397 . Cla09g00900 Cam09g0952 Cec09g0956 Cco09g0958 . . Cre09g0922 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006024 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 2 1 1 3 1 1 38