Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1518 ATGGGGAGCTTAAAGGATGAAGATCTGCTTCAAATGGTGAGTGAATTCATAGAATCTGGGTCCCATGATTCTTCCAAGCCAATATCATCTTCTAACAAGACCAAGTTGCATGAAACCACATATCACAAACTCCAGGAAATACTTAGGGCAGGAACATTAAACAAGGCAGTACTTGAAATTCTAAAGAAGATATCATCATATTATAGCATGATCAGAAATGATGATCACCATCATGGTGATGAAAGTGTTAGCATTAGTGATGTTAATAAGTGGGTAGTTTTAAGGCTAATGACGGATGGATATGAGGCTTCTCTGTGCCGACCCATTTCTTCATTTGTTTCAACCATGGATCATTTCACAGCAGCAGGTTATAGCCATGAATATGTCGAGGTTATAACAGCAGATCAGTCAAACGAAGCAAGAAGGGTCATTGTTGATATGGATTTCAGGTCACAATTTGAAGTGGCAAGGCCCACGTCGAGCTTCAAGAAGCTGACTGAATCACTTCCTGTAATATTTGTTGGGACTGAAGAAAAGCTTCATGAGATTATCTCTCTGGTTTGCTCAGCCGCAAAGAAATCGTTGAAAGAGAAGGGTCTTCATGTTCCTCCCTGGAGAAAAGCCAGCTACATGCATTCTAAGTGGAGCTCTAATCACTGCACTTAA 666 40.54 MGSLKDEDLLQMVSEFIESGSHDSSKPISSSNKTKLHETTYHKLQEILRAGTLNKAVLEILKKISSYYSMIRNDDHHHGDESVSISDVNKWVVLRLMTDGYEASLCRPISSFVSTMDHFTAAGYSHEYVEVITADQSNEARRVIVDMDFRSQFEVARPTSSFKKLTESLPVIFVGTEEKLHEIISLVCSAAKKSLKEKGLHVPPWRKASYMHSKWSSNHCT 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11776179 11776933 + Conep04aG0157000.1 Cone4ag1518 436496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1518 221 NCBIfam uncharacterized plant-specific domain TIGR01615 92 220 IPR006502 -
Cone4ag1518 221 PANTHER OS03G0796600 PROTEIN 6 219 IPR006502 -
Cone4ag1518 221 Pfam PDDEXK-like family of unknown function 11 218 IPR006502 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1518 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1518 Cone-Chr4:11776179 Cone7ag0287 Cone-Chr7:1228990 1.02E-29 dispersed
Cone12ag0029 Cone-Chr12:221130 Cone4ag1518 Cone-Chr4:11776179 2.17E-42 wgd
Cone4ag1518 Cone-Chr4:11776179 Cone8ag0031 Cone-Chr8:199772 1.87E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1220 . . . . . . Bma04g00397 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013620 0 1 0 0 0 1 1 1 1 0 0 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 2 0 1 2 26