Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1526 ATGCTGCAGCAAGGCAAAATTCCAGCTTTGGTCTTAATTTGGTTGATCTTAGCTGTTTGTCCTCTATGGATAGTTTATGCTAACATGGAAGGTGAAGCTTTGCACAGTTTAAGGGCGAGCTTACGGGACCCCAACAATGTCCTTCAGAGCTGGGATCCAACCCTTGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAACGATAATAGTGTCATCAGAGTTGATCTTGGAAATGCTGCTTTGTCGGGTCAACTCGTTCCACAACTCGGCCAGCTTAAGAATCTTCAGTATCTTGAACTCTACGGTAATAATATAAATGGGCCTATTCCTAATGACCTGGGAAATCTAACTAACTTGGTCAGCTTGGATCTTTACTTCAACAATTTTTCGGGCCCCATACCTGACACATTGAACAAATTGTCTAAATTGCGATTCCTCCGGCTTAACAACAACAGCTTGTCGGGTTCTATTCCCTTGTCGTTGACTAATATCACAGCCCTTCAAGTGTTGGATCTATCAAATAACCGTCTTGCAGGAGTGGTCCCCGACAATGGTTCCTTCTCCCTGTTCACTCCTATCAGTTTTGCTAACAATTTGGATCTATGTGGCCCTGTTACAGGGCATCCCTGCCCTGGATCTCCTCCTTTTTCTCCTCCTCCTCCATTTGTCCCACCATCCCCTATTTCTTCACCAGGTGGGAATAGTGCAACCGGAGCAATTGCCGGAGGAGTTGCTGCCGGTGCTGCCTTACTTTTTGCCGCTCCAGCTATTATATTTGCATGGTGGCGTAGAAGAAAACCACAAGAATTTTTCTTTGATGTGCCTGCCGAAGAGGATCCGGAAGTCCATCTGGGTCAGCTTAAAAGATTCTCATTGCGAGAATTACAAGTTGCCACCGATACTTTTAGTAACAAAAACATACTGGGTAGGGGCGGATTTGGTAAAGTATATAAAGGACGTTTAGCAGATGGAACACTTGTAGCCGTAAAGAGACTAAAAGAAGAACGTACACCTGGTGGGGAACTGCAGTTTCAAACTGAAGTCGAGATGATCAGCATGGCTGTGCATCGGAATCTCCTCCGATTACGGGGGTTTTGCATGACCCCAACCGAACGACTCCTCGTTTATCCCTACATGGCTAATGGAAGCGTCGCATCTTGCTTAAGAGAACGTCCGCCCACTCAGCCACCTCTAGAATGGCAAACAAGGAAGCTGATCGCATTAGGATCAGCAAGGGGGCTTTCATACTTGCATGATCATTGTGATCCCAAGATTATTCATCGAGATGTAAAAGCAGCTAACATTTTACTTGACGAAGAGTTTGAGGCTGTTGTAGGGGACTTTGGGTTGGCTAAGCTTATGGACTACAAGGACACTCATGTCACTACAGCTGTTCGTGGCACTATTGGACATATAGCTCCAGAGTATCTTTCTACCGGAAAATCATCCGAAAAAACAGATGTTTTTGGTTATGGGATTATGCTTCTTGAGCTTATAACTGGACAGAGAGCTTTTGATCTTGCCCGGCTCGCCAATGATGATGATGTCATGTTACTTGATTGGGTGAAAGGGCTTTTGAAAGAGAAGAAGTTGGAAATGCTGGTTGATCCTGATCTGCAGAAAAACTATGTAGAATCAGAGGTGGAGCAGCTGATCCAGGTGGCACTGCTCTGCACACAAGGCTCCCCAATGGAGCGGCCGAAAATGTCGGAAGTAGTTAGAATGCTTGAAGGTGATGGGTTGGCTGAGAAATGGGATGAGTGGCAAAAGATTGAAGTTCTACGACAAGAATTGGAGCTGACAACTCATTCCCATTCTGATTGGATTCTGGACTCCACTGAAAATCTACATGCTGTTGAGCTTTCAGGTCCAAGATAA 1881 45.14 MLQQGKIPALVLIWLILAVCPLWIVYANMEGEALHSLRASLRDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYGNNINGPIPNDLGNLTNLVSLDLYFNNFSGPIPDTLNKLSKLRFLRLNNNSLSGSIPLSLTNITALQVLDLSNNRLAGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISSPGGNSATGAIAGGVAAGAALLFAAPAIIFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPTQPPLEWQTRKLIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQKNYVESEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDEWQKIEVLRQELELTTHSHSDWILDSTENLHAVELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11830753 11836607 + Conep04aG0157800.1 Cone4ag1526 436504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1526 626 Pfam Leucine Rich Repeat 168 184 IPR001611 GO:0005515(InterPro)
Cone4ag1526 626 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Cone4ag1526 626 Pfam Leucine Rich Repeat 119 141 IPR001611 GO:0005515(InterPro)
Cone4ag1526 626 Pfam Leucine Rich Repeat 95 117 IPR001611 GO:0005515(InterPro)
Cone4ag1526 626 ProSiteProfiles Protein kinase domain profile. 303 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1526 626 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Cone4ag1526 626 SMART serkin_6 303 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1526 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
Cone4ag1526 626 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Cone4ag1526 626 Pfam Protein tyrosine and serine/threonine kinase 306 577 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1526 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 626 - -
Cone4ag1526 626 SUPERFAMILY Protein kinase-like (PK-like) 282 578 IPR011009 -
Cone4ag1526 626 FunFam Somatic embryogenesis receptor kinase 1 26 213 - -
Cone4ag1526 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Cone4ag1526 626 SUPERFAMILY L domain-like 30 192 - -
Cone4ag1526 626 FunFam Somatic embryogenesis receptor-like kinase 1 380 597 - -
Cone4ag1526 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1526 626 Gene3D Ribonuclease Inhibitor 26 213 IPR032675 -
Cone4ag1526 626 Gene3D Transferase(Phosphotransferase) domain 1 380 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0604 Cone-Chr15:3108538 Cone4ag1526 Cone-Chr4:11830753 1.89E-34 dispersed
Cone17ag0757 Cone-Chr17:5685624 Cone4ag1526 Cone-Chr4:11830753 6.80E-45 dispersed
Cone20ag0684 Cone-Chr20:4226198 Cone4ag1526 Cone-Chr4:11830753 0 dispersed
Cone3ag0939 Cone-Chr3:4872033 Cone4ag1526 Cone-Chr4:11830753 8.01E-251 dispersed
Cone4ag1526 Cone-Chr4:11830753 Cone8ag0793 Cone-Chr8:7971620 4.24E-290 dispersed
Cone4ag1526 Cone-Chr4:11830753 Cone7ag1426 Cone-Chr7:10133383 1.77E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82796 PF07899 Frigida 3.30E-112 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1526 K13418 - gmx:100789884 1041.57