Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1537 ATGCAAAGCTCAGAGACCTATAAACCTACTTCTCACACTTACACCACCTTCATTTCGGCATTTGCCCATTCGGGAAACTCTGAAGCCATGGAAGCATGGAATTCAGCTAAAATTGCTTCTGGGTTCTCTTTCGACTTTCAAACCTATGAATCTCTTATACACGGTAGTGTGAAATCAAACAATATCGATATTGCATATAAATATTACTTGGAAATGATGGAATCTGGGTTCACACCGAGCTTGAAGAGAAGTTTTGATCAAGCAAAAGAGTTCTTCAAATCCGTGATGAACAATGGATGGGGGATCAATGAGAATATGACACAGAGGTTTATTCATATGTATTTCGAATCTGGAAAAGGGGAAGAGGCAGAGGAGCCACTTACAGGGTTAAATGAATCAAATCTGATTTCGATTCCGGGTTTTCTTGCACAGATTCACTGCATAATTATAAGGATGCATGCAATGTCGGATAGATTGGATGATGTGGAGTACTCTGTTGGAAGAATGTTGAAGCAAGGTTTGTCATTGGATGTAGTGATAAAGAACATGTGA 552 39.31 MQSSETYKPTSHTYTTFISAFAHSGNSEAMEAWNSAKIASGFSFDFQTYESLIHGSVKSNNIDIAYKYYLEMMESGFTPSLKRSFDQAKEFFKSVMNNGWGINENMTQRFIHMYFESGKGEEAEEPLTGLNESNLISIPGFLAQIHCIIIRMHAMSDRLDDVEYSVGRMLKQGLSLDVVIKNM 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11873556 11874151 - Conep04aG0158900.1 Cone4ag1537 436515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1537 183 Gene3D Tetratricopeptide repeat domain 1 139 IPR011990 GO:0005515(InterPro)
Cone4ag1537 183 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 79 IPR002885 -
Cone4ag1537 183 PANTHER EXPRESSED PROTEIN 1 178 IPR044179 GO:0003729(InterPro)
Cone4ag1537 183 Pfam PPR repeat 13 31 IPR002885 -
Cone4ag1537 183 Pfam PPR repeat 48 77 IPR002885 -
Cone4ag1537 183 NCBIfam pentatricopeptide repeat 48 80 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1537 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1537 Cone-Chr4:11873556 Cone7ag1415 Cone-Chr7:10099562 9.74E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g336 Blo01g01708 . . . . Bpe02g00235 . Bma01g02485 . . Cma01g01595 . . . . . . . . . . . . . . . . . . . . Cone4ag1537 Cone7ag1415 . . Lsi04g02220 Csa03g04432 Chy04g00267 . . . . . . . . . Sed05g1613 Cmo01g01643 . . . Car01g01214 . . Cpe02g00382 Bhi09g02413 Tan01g3774 Cmetu04g2386 . Hepe01g2114 Mch11g0652 . . . . . . . . . . . Cme04g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013351 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27