Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1539 ATGGAGTTCTCCTTGTTGCAAGAAATACATGGCAAACTAGCAAATGATCCGATAATCATGATCAACAGCAACAAGCCCTCATCTCCACGACAAGTATGTGTACTCGGGCCCTTGATAGTCGGCGCCGGCCCATCTGGCCTTGCTGTCACAGCCTGCCTCAAACAAAAGAACATCCCAAGTGTCCTCCTAGAAAGATCCAATTGCATAGCATCATTATGGAAATACAAGACCTATGATCGTCTTCGCCTCCATTTACCGAAGCAGTTTTGTGAGCTACCCTTCATGAAATTCCCCTCCCATTTCCCTACTTACCCTACAAAACAACAATTCATTAACTACCTTGAAGCCTATGCTAGAAAATTTGATATCAAGCCGAGGTTCAATGAGACCGTTTCACAAGCGCAATACGATGCTAGGATTGGGTTGTGGAGGGTAAGGACTCGTGCCGGAGTGAAAGGCGGGGAGGTGACGGAGTTTTTGTGCCGGTGGTTGATAGTGGCTACTGGAGAGAATGCGGAGGCGGTGATGCCGGAATTTGAAGGGGAGGATGACTTTGGAGGGGATATAAGGCACACGAGTTTGTATAAGAGTGGTGATGAGTTTAGAGGGAAAAAGGTTTTGGTGGTTGGGTGTGGCAATTCAGGTATGGAGGTTTGTCTGGATCTTTGTGACCATGCTGCTAGCCCTTCTCTTTCTGTTAGAGACACAGTACACGTACTACCACAAGAGATGCTGGGAGAGTCAACTTTCGGGCTGTCCATGTGGTTGCTCAAGTGGTTTCCTATTCGACTTGTGGATTGGTTCCTGTTAATAGTGTCGAGACTTATGCTTGGTAATACAGCTAGATTCGGATTGCACCGGCCGAAAACCGGTCCCCTTGAGTGTAAGAAATTGACTGGAAAGACACCGGTACTTGACTTTGGTACACTGGCCAAAATCAAAAGTGGAGATATTAAGGTATGTCGGAGCATCAAGCGGCTGAAATATCACACAGTGGAATTTGTTGATGGAAGATCAGAAAACTTTGATTCTATCATCTTAGCAACTGGTTACAGAAGCAATATACCATCTTGGCTAAAGGTCCCTTTTTTTTTTTTCTTCTTCTTACTCCTTTATCTTTCTCTCCCAAGGGTCCCACCTCCACTCACCCTTAAAAAAAAGGGGGGAGGGGTAAATTCCACCTTTTGCAAACCCTTTTGTCATCTAATTGCTTTTCAATATAGTATGATATAA 1233 44.93 MEFSLLQEIHGKLANDPIIMINSNKPSSPRQVCVLGPLIVGAGPSGLAVTACLKQKNIPSVLLERSNCIASLWKYKTYDRLRLHLPKQFCELPFMKFPSHFPTYPTKQQFINYLEAYARKFDIKPRFNETVSQAQYDARIGLWRVRTRAGVKGGEVTEFLCRWLIVATGENAEAVMPEFEGEDDFGGDIRHTSLYKSGDEFRGKKVLVVGCGNSGMEVCLDLCDHAASPSLSVRDTVHVLPQEMLGESTFGLSMWLLKWFPIRLVDWFLLIVSRLMLGNTARFGLHRPKTGPLECKKLTGKTPVLDFGTLAKIKSGDIKVCRSIKRLKYHTVEFVDGRSENFDSIILATGYRSNIPSWLKVPFFFFFFLLLYLSLPRVPPPLTLKKKGGGVNSTFCKPFCHLIAFQYSMI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11880067 11882733 - Conep04aG0159100.1 Cone4ag1539 436517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1539 410 PRINTS FAD-dependent pyridine nucleotide reductase signature 37 56 - -
Cone4ag1539 410 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Cone4ag1539 410 PRINTS FAD-dependent pyridine nucleotide reductase signature 205 223 - -
Cone4ag1539 410 FunFam Flavin-containing monooxygenase 37 367 - -
Cone4ag1539 410 Gene3D - 37 363 IPR036188 -
Cone4ag1539 410 SUPERFAMILY FAD/NAD(P)-binding domain 38 237 IPR036188 -
Cone4ag1539 410 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 33 360 IPR050982 GO:0004497(PANTHER)|GO:0009851(PANTHER)|GO:0050660(PANTHER)
Cone4ag1539 410 SUPERFAMILY FAD/NAD(P)-binding domain 203 363 IPR036188 -
Cone4ag1539 410 Pfam Flavin-binding monooxygenase-like 39 356 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Cone4ag1539 410 PRINTS Pyridine nucleotide disulphide reductase class-II signature 36 58 - -
Cone4ag1539 410 PRINTS Pyridine nucleotide disulphide reductase class-II signature 201 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1539 K11816 - - rcu:8272372 556.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1539 Cone-Chr4:11880067 Cone7ag0683 Cone-Chr7:3809477 1.52E-155 dispersed
Cone12ag0026 Cone-Chr12:208671 Cone4ag1539 Cone-Chr4:11880067 4.17E-95 wgd
Cone4ag1539 Cone-Chr4:11880067 Cone7ag1413 Cone-Chr7:10091266 9.14E-250 wgd
Cone4ag1539 Cone-Chr4:11880067 Cone8ag0025 Cone-Chr8:181353 4.92E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g339 . . . Bda03g00026 Bpe02g01196 . Bma04g00024 . Cmo05g00631 Cmo12g00219 . Cma05g00605 . Car12g00249 Sed01g1287 Cpe07g00228 . Bhi04g00822 Tan02g2580 Cmetu03g1256 . Hepe10g0344 . Lcy13g1389 . . . . . . . Cone4ag1539 Cone7ag1413 Cone17ag1107 Cone20ag0614 . . . Cme03g01726 Blo17g00055 Blo18g00069 . . Bpe14g00534 . Bma01g01332 Bma02g00070 . . . . Cma12g00265 . Car05g00547 Cpe11g00528 . . . . . . . . Cla08g01237 Cam08g1694 Cec08g1273 Cco08g1394 Clacu08g1391 . Cre08g1176 Lsi08g01100 . Chy03g01231 .
Vvi18g1184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000974 4 2 5 4 5 2 3 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 2 2 2 2 2 3 83