Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1541 ATGGTTGACTTCAGCACCTTCAAGCTTGGTAAAAATGTTAAGGCAATATCTACAGAGGTGGAGATCAGAGACAGCACCAAAAAGCAGCGTTTTACTGTCTTAAACGGGATTACAGCCTCCGAGATCCCATTGAAGGGTGAAGATGATGGGATTATGGTTAATGCACTTGCTGTCTCTCATCTTGATACATCTGGTTGGAACCCTAAGAATTTGGCTTTTCAAGTGCTTAAGGTCAAGCCTGTTGTCAAAACCGTCGTCAGTGAAGAGAACGTGAGAGAGCTCTGGGCGCGCGCTTATCCGCCAACGCTAGGGTTTTCTACGGCAACGGGTAGAGAAAAATTGCAGGCCATTCCCTCTCAGTCTTCGTCATTTTATATATACATTGCTTTACCAGAGAAGACCTTCTATGGGACAATGGTAAAAGAAGAGAATGTTGAGAACATTGAATTGAAATCAGGTAAACAGGAAGGAATTGATGGGAAAAAGGATGAAGCAGAGAATGTTGAGAACATTGAATTCAAATGGGGCAAACAGAGAGGAATTGGTGGGAAAAAGAGAGATGTTCAGTTTTATGAGTCTTTTACTTATGATGGTGTACAGTACTCTCTTTATGACTCTGTTTACGTGTTTAAGGAAAGTGAACCCGAGCCTTATATTGGCAAACTAATAAAAATCTGGAAAAATGCTGATACCACAAAGAAAGTGAAGATACTCTGGTTTTTTCGGCCTTGTGAGATTCTAAAGTTTCTCGGAGCTGAAGTCACTCTTGATGCTGAATTATTTTTGGCATCCGGCGATGGTGTAGGTCTGGCAAATGTCAATCCTTTGGAAGCAATTGCTGGGAAATGCAATGTTGTCTGCATTTCAAAGGAGAAGCGAAATGCACAGCCATCGATTGAAGAGCAACGGATGGCTGATTTTGTATTTTATCGAACATTTGATGTCGAGCACCGTAAGATCTCCCATGATCTGGGTGACAAGATTGCCGGAATAGATGTTAAATTGTTATTAAACAAAATAGATCTTCCAAAGGCCAAGGATGTTCTGTTGCATGATCAGTGCAGAAAAACAGATGGTGGAAATGCAATTGCAAAGGCTGAGGCGACAATTCCTCCCAAACAAACCCACTCTAAAGGAAACGTTGGAAGTGAAATTAAGCTTGGCTCCACTATTGGTGGTGGAAAAGATAAAATGGCTAACAATCTAGAACTCTTAAAGGGTGAGTTACCATCGGGGTTGAGAATTGGTTCTAATAAAACTCAGGGTAAGGATGCTAAAGCTTGCGTCCTTGAAGCTGAGGTTTCAGCGAAAGTAAGATTTAGTAAGGATTTTGAAGAATTGGATCACAGACTATTGAACAAGGCAAAGCTTGATGGAACTCCTCATTTAGTAGGAGATAAGAACAAACGAAAGATTCCCCAGGATTCTCGTGGTATTGAAGAACGCCATGCAAAGAAGCTAAGGTTGGATGAGAAGCAAACAAAACTTGCTAACGGTAAGATGCCTAAGTCACCTCAACGAGTTTTGGCAGATGAAGAGAATGAAATTGATAGTCGAGAAATAGAAGTCACAAGAATGCCAGAACCCGAATCAAGCAAATGGTTTAAGGCACTTCCCTGGGAAGAGAGAATGAAAGATGCTTATGAGAAGGGAACGCTTGTTTTGATTCAAAATTTAGATCCAACTTACACTTCAACAGAAATACAGGATATATTCTGGCATGGCTTCAAGGAATGTTGCACGGCGAAAATGATTCAGCGGACTGCATTTTCCAGCCCTCACTGTGGTCAGGCTTATGTCATATTTAAAACAAAGGGAGGAGCAGAAAAGGCCATTAGAATGTTAAATGAGGGTTGCCTATTACTTTCAAATGGGAGGCCTCTTGTTGGCAGCTTTGCAAATCCCTGCTTTCCCTCCAGGAAGCCACAGTATTTTGGCCATCTTACCATTGATAAACATAGATCTCAGATTCAACGAGAGATGAAAGATGCTGTATCTACATCACACTGTTCTCAGCCGAACACAGTTGAATATGAAATGGCCATGGAATGGTCCTTGCTTCAACAAAGAACAGAGAAAGCATGGAAAAGTTTATACAAGCAACAAGGACAGGAGCTGAAGCAGCTAAAAGCTAACCTGAAATCTAAATGA 2151 41.28 MVDFSTFKLGKNVKAISTEVEIRDSTKKQRFTVLNGITASEIPLKGEDDGIMVNALAVSHLDTSGWNPKNLAFQVLKVKPVVKTVVSEENVRELWARAYPPTLGFSTATGREKLQAIPSQSSSFYIYIALPEKTFYGTMVKEENVENIELKSGKQEGIDGKKDEAENVENIEFKWGKQRGIGGKKRDVQFYESFTYDGVQYSLYDSVYVFKESEPEPYIGKLIKIWKNADTTKKVKILWFFRPCEILKFLGAEVTLDAELFLASGDGVGLANVNPLEAIAGKCNVVCISKEKRNAQPSIEEQRMADFVFYRTFDVEHRKISHDLGDKIAGIDVKLLLNKIDLPKAKDVLLHDQCRKTDGGNAIAKAEATIPPKQTHSKGNVGSEIKLGSTIGGGKDKMANNLELLKGELPSGLRIGSNKTQGKDAKACVLEAEVSAKVRFSKDFEELDHRLLNKAKLDGTPHLVGDKNKRKIPQDSRGIEERHAKKLRLDEKQTKLANGKMPKSPQRVLADEENEIDSREIEVTRMPEPESSKWFKALPWEERMKDAYEKGTLVLIQNLDPTYTSTEIQDIFWHGFKECCTAKMIQRTAFSSPHCGQAYVIFKTKGGAEKAIRMLNEGCLLLSNGRPLVGSFANPCFPSRKPQYFGHLTIDKHRSQIQREMKDAVSTSHCSQPNTVEYEMAMEWSLLQQRTEKAWKSLYKQQGQELKQLKANLKSK 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11892738 11902602 + Conep04aG0159300.1 Cone4ag1541 436519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1541 716 PANTHER PROTEIN ANTI-SILENCING 1 166 715 - GO:0003723(PANTHER)|GO:1905642(PANTHER)
Cone4ag1541 716 Pfam RNA recognition motif 554 618 IPR000504 GO:0003723(InterPro)
Cone4ag1541 716 ProSiteProfiles BAH domain profile. 199 324 IPR001025 GO:0003682(InterPro)
Cone4ag1541 716 SMART BAH_4 199 324 IPR001025 GO:0003682(InterPro)
Cone4ag1541 716 Pfam BURP domain 39 81 IPR004873 -
Cone4ag1541 716 CDD RRM_SF 554 628 - -
Cone4ag1541 716 ProSiteProfiles BURP domain profile. 1 98 IPR004873 -
Cone4ag1541 716 Gene3D - 160 323 IPR043151 -
Cone4ag1541 716 Gene3D - 539 636 IPR012677 -
Cone4ag1541 716 FunFam Bromo-adjacent homology (BAH) domain-containing protein 169 320 - -
Cone4ag1541 716 SUPERFAMILY RNA-binding domain, RBD 544 635 IPR035979 GO:0003676(InterPro)
Cone4ag1541 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 552 635 IPR000504 GO:0003723(InterPro)
Cone4ag1541 716 Pfam BAH domain 200 316 IPR001025 GO:0003682(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1541 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1541 Cone-Chr4:11892738 Cone7ag1412 Cone-Chr7:10087323 1.60E-26 dispersed
Cone4ag1540 Cone-Chr4:11886417 Cone4ag1541 Cone-Chr4:11892738 3.47E-27 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43