Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1544 ATGAATCTCTCCTTACAGATCAGCCCACCTGTATCTTGTCAGGATTACAATCTTGTAAATGGGTTTAGCTCCACTACTACAGAATCTGGCAGCAGTAGCATTGGAAGTGATTTAAGCCGCGATCAAAATAGTATGAATTTGTTCAATCCTGGTATCGCTTATAATGCTGAAATGCTCGTTGGAAAGTTTAGCAATGGTTATAGTAATAGCGGCCATCATCATCATCTTCACCATGTACAACCTAAAATCTACGGCCGGGATTTCAAGAGGATTAGTAGCGGTCATGTGAAGAGAAGCGTACGAGCTCCACGAATGAGATGGACGACTACCCTCCATTCTCATTTTGTTCACGCCGTTCAGCTTCTAGGAGGCCACGAAAGGGCAACGCCAAAATCAGTGATGGAGCTGATGAATGTAAAAGATCTAACCCTAGCTCACGTGAAGAGTCACCTGCAGATGTACAGAACAGTGAAGAGCACTGACATGGGAACCGGTCAAGGGCAGGTTGATATGCAGGTGAACCAAGAGATAGTATCCCCGCATGATCATCACAACTTAGGTGCAGTGTCACATGAGAATACACAGAGGGTTTCTTGGTCATCATCATTAATGACGACGAACGATGCCCAAAATGCTCTGACAAATCTCAGGACCAATAATGCATCCAAGGTTGGGCCGTGGAATAGCGTGAAGGAGAGGGTGGATTCGAGCTCCCTGTCATCGTCCTCATCAGACCACACCGATCTTAATTTAGAATTCACTCTTGGGAGGCCAAGCTGGCAATTAGTCGACTCTGCTGGCTCATGA 807 45.85 MNLSLQISPPVSCQDYNLVNGFSSTTTESGSSSIGSDLSRDQNSMNLFNPGIAYNAEMLVGKFSNGYSNSGHHHHLHHVQPKIYGRDFKRISSGHVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVMELMNVKDLTLAHVKSHLQMYRTVKSTDMGTGQGQVDMQVNQEIVSPHDHHNLGAVSHENTQRVSWSSSLMTTNDAQNALTNLRTNNASKVGPWNSVKERVDSSSLSSSSSDHTDLNLEFTLGRPSWQLVDSAGS 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11912283 11914080 - Conep04aG0159600.1 Cone4ag1544 436522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1544 268 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 156 IPR006447 GO:0003677(InterPro)
Cone4ag1544 268 Pfam Myb-like DNA-binding domain 104 155 IPR001005 -
Cone4ag1544 268 FunFam Myb family transcription factor 101 159 - -
Cone4ag1544 268 SUPERFAMILY Homeodomain-like 100 157 IPR009057 -
Cone4ag1544 268 Gene3D - 102 159 - -
Cone4ag1544 268 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 2 262 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1309 Cone-Chr17:9308212 Cone4ag1544 Cone-Chr4:11912283 3.64E-54 dispersed
Cone4ag1544 Cone-Chr4:11912283 Cone8ag0489 Cone-Chr8:3447685 5.85E-32 dispersed
Cone20ag0163 Cone-Chr20:708742 Cone4ag1544 Cone-Chr4:11912283 3.50E-47 wgd
Cone4ag1544 Cone-Chr4:11912283 Cone7ag1407 Cone-Chr7:10066318 9.42E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46021 PF07738 Sad1_UNC 9.70E-34 CL0202 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1544 - - - 0.0