Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1544 | ATGAATCTCTCCTTACAGATCAGCCCACCTGTATCTTGTCAGGATTACAATCTTGTAAATGGGTTTAGCTCCACTACTACAGAATCTGGCAGCAGTAGCATTGGAAGTGATTTAAGCCGCGATCAAAATAGTATGAATTTGTTCAATCCTGGTATCGCTTATAATGCTGAAATGCTCGTTGGAAAGTTTAGCAATGGTTATAGTAATAGCGGCCATCATCATCATCTTCACCATGTACAACCTAAAATCTACGGCCGGGATTTCAAGAGGATTAGTAGCGGTCATGTGAAGAGAAGCGTACGAGCTCCACGAATGAGATGGACGACTACCCTCCATTCTCATTTTGTTCACGCCGTTCAGCTTCTAGGAGGCCACGAAAGGGCAACGCCAAAATCAGTGATGGAGCTGATGAATGTAAAAGATCTAACCCTAGCTCACGTGAAGAGTCACCTGCAGATGTACAGAACAGTGAAGAGCACTGACATGGGAACCGGTCAAGGGCAGGTTGATATGCAGGTGAACCAAGAGATAGTATCCCCGCATGATCATCACAACTTAGGTGCAGTGTCACATGAGAATACACAGAGGGTTTCTTGGTCATCATCATTAATGACGACGAACGATGCCCAAAATGCTCTGACAAATCTCAGGACCAATAATGCATCCAAGGTTGGGCCGTGGAATAGCGTGAAGGAGAGGGTGGATTCGAGCTCCCTGTCATCGTCCTCATCAGACCACACCGATCTTAATTTAGAATTCACTCTTGGGAGGCCAAGCTGGCAATTAGTCGACTCTGCTGGCTCATGA | 807 | 45.85 | MNLSLQISPPVSCQDYNLVNGFSSTTTESGSSSIGSDLSRDQNSMNLFNPGIAYNAEMLVGKFSNGYSNSGHHHHLHHVQPKIYGRDFKRISSGHVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVMELMNVKDLTLAHVKSHLQMYRTVKSTDMGTGQGQVDMQVNQEIVSPHDHHNLGAVSHENTQRVSWSSSLMTTNDAQNALTNLRTNNASKVGPWNSVKERVDSSSLSSSSSDHTDLNLEFTLGRPSWQLVDSAGS | 268 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 11912283 | 11914080 | - | Conep04aG0159600.1 | Cone4ag1544 | 436522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1544 | 268 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 103 | 156 | IPR006447 | GO:0003677(InterPro) | |
Cone4ag1544 | 268 | Pfam | Myb-like DNA-binding domain | 104 | 155 | IPR001005 | - | |
Cone4ag1544 | 268 | FunFam | Myb family transcription factor | 101 | 159 | - | - | |
Cone4ag1544 | 268 | SUPERFAMILY | Homeodomain-like | 100 | 157 | IPR009057 | - | |
Cone4ag1544 | 268 | Gene3D | - | 102 | 159 | - | - | |
Cone4ag1544 | 268 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 2 | 262 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1309 | Cone-Chr17:9308212 | Cone4ag1544 | Cone-Chr4:11912283 | 3.64E-54 | dispersed | |
Cone4ag1544 | Cone-Chr4:11912283 | Cone8ag0489 | Cone-Chr8:3447685 | 5.85E-32 | dispersed | |
Cone20ag0163 | Cone-Chr20:708742 | Cone4ag1544 | Cone-Chr4:11912283 | 3.50E-47 | wgd | |
Cone4ag1544 | Cone-Chr4:11912283 | Cone7ag1407 | Cone-Chr7:10066318 | 9.42E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46021 | PF07738 | Sad1_UNC | 9.70E-34 | CL0202 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1544 | - | - | - | 0.0 |