Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1548 | ATGCAGGTCTATGGCTACTTCATTTTGCTCTATCTTCTCCTTCTATCCTCTTCTTATTCGGCTTTGTCTGATATAGAAACCTCTTTTATCGTTCGTCAACAACTTACTACCCTATATGAGGATGGTATTTTGCCTGATCATTTTGAATTTACGGTTCAAGTGAATAAGACTTTTCCGAACCCCAGGCTTCGACGTGCATTCATTGCACTCCAAGCATGGAAAAAGGCTATATATTCCGACCAATTTAAGACGACTGAGAATTGGGTTAGAGACGATGTTTGTGCATACAAAGGTGTTTGTTGTGCACCCGCTTTGGATAAACTGGAAGAGACCGTTGTGGCCGGGATGGATATTAACCATGCTGATATTGCTGGCTGCCTCCCCACCGAGTTGGGCTTGTTAGATGACATAGCACTGTTTCATATCAATACAGATAGGTTTTGTGGGATTATTCCAAAGAGCTTTAAAAAGCTGATACTTCTTCATGAGCTTGATGTTAGCAATAACCGCTTTGTGGGTCCTTTCCCTGAGGTTGTATTAGAAATTCCCAAGCTGAAATATCTTGATCTTAGGTACAACAATTTCGAGGGACCTTTGCCTTTAGAGCTTTTCGACATAGAGTTAGATGCTATCTTCTTGAACAACAACCGATTCACATCTCACATACCTGAGAATCTCTGA | 681 | 41.12 | MQVYGYFILLYLLLLSSSYSALSDIETSFIVRQQLTTLYEDGILPDHFEFTVQVNKTFPNPRLRRAFIALQAWKKAIYSDQFKTTENWVRDDVCAYKGVCCAPALDKLEETVVAGMDINHADIAGCLPTELGLLDDIALFHINTDRFCGIIPKSFKKLILLHELDVSNNRFVGPFPEVVLEIPKLKYLDLRYNNFEGPLPLELFDIELDAIFLNNNRFTSHIPENL | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 11925894 | 11926574 | + | Conep04aG0160000.1 | Cone4ag1548 | 436526 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1548 | 226 | Pfam | Leucine Rich Repeat | 161 | 177 | IPR001611 | GO:0005515(InterPro) | |
| Cone4ag1548 | 226 | Pfam | Leucine Rich Repeat | 184 | 203 | IPR001611 | GO:0005515(InterPro) | |
| Cone4ag1548 | 226 | FunFam | Leucine-rich repeat extensin-like protein 1 | 67 | 226 | - | - | |
| Cone4ag1548 | 226 | Gene3D | Ribonuclease Inhibitor | 67 | 226 | IPR032675 | - | |
| Cone4ag1548 | 226 | SUPERFAMILY | L domain-like | 70 | 225 | - | - | |
| Cone4ag1548 | 226 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 8 | 226 | IPR051582 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag1306 | Cone-Chr17:9298742 | Cone4ag1548 | Cone-Chr4:11925894 | 4.45E-57 | dispersed | |
| Cone4ag0973 | Cone-Chr4:8421062 | Cone4ag1548 | Cone-Chr4:11925894 | 9.04E-23 | dispersed | |
| Cone4ag1548 | Cone-Chr4:11925894 | Cone5ag1503 | Cone-Chr5:10171994 | 1.16E-55 | dispersed | |
| Cone20ag0166 | Cone-Chr20:717390 | Cone4ag1548 | Cone-Chr4:11925894 | 5.79E-44 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1548 | - | - | - | 0.0 |