Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1555 ATGACGGTTCCCGGCGAGCCTGCTACGTCCGTAGCGCAGAAATCTTCTCTATACCAAAGAGTTTCGGATTCTAAATTCTCGCTGAACCTTCCAGAACCTCAAAGGAAGCTCACCAGGCAGAGGAAGCTCAGGTACCTTACTCATAAGGAGGCTGGCTTATTTTCCACTCAGCAACCTCTTCCGTCTCCGAGTTCTCCTCCCATTGCCGCCGATCACTGGTCCTCGGTAGCGATACCGCAACCTCTGCCGCTCCCTGATTTGTGTTGGATTAGGAGAGTCGCGTCAGCCGCTTCGACTTCCACTTCGGGACAAGGTCATACTCTATCGCCGAAAGGAACTACAAGGAGGAATGGGGAAACTGTAAAGAGTTCAACTAAGATTTTGAGTACCTTTCAAAATAAATTTTCTAAAGAGGACAATGGAGGAGGAAATGTTGATTTCAAGTTAAGATTGTGGTTGACTTCTGTAAAGGCTGTAGCAAGTGGTTCATCAAGTCTATCTAATAGCCCAAAGAGATCAAACACTGAGGAATTTTTTCACTCTTATGTTCCTACAAATTCATCAAAATGCTATAAAAACAGTGATAGAGGACCCTTACAAGATGTAAACCATGAAGGGGAACGATGTAAGTTAACACTGAATGTCTCGGTAAGGAGTGCTCCGACAAGTGCTCTACCAAGCCCGACTCGTAGTCCACAAGGATCAAACACTAGAGATTGTTTCGGTACATGCATGGCTTCTCAAGAATATCCCGTTGGATCACCTGTAAAAGCTGCACACAGTTCAGATCAATCACCTCTTAGAAGCCCAACAGCTAGAAGTCCAAATCTAAACTCCAGATGTCCTAATGGAATTGTCGCACCAGAAAGCAGTTATCAAGCCAATATTGCTCACCCCTTGCCCCGTCCTCCTGGACCAAATATTCATAGTTTTAGGGAAAAGCCAAATGTTTCCTCATTGAAAGGCCAATGGCAGAAAGGAAAGCTTATTGGTCGTGGTGCATTTGGAAGTGTGTATCTTGCAACCAATCGAGAGACTGGAGCTTTATGCGCAATGAAGGAGGTTGACCTCATTCCTGATGACTCTAAATCTGCTGAATGTATAAAGCAATTGGAGCAGGAAATTAAAACACTGCATCAACTAAAGCATCAGAATATCGTGCAGTACTATGGGAGTGAAATAATTGATGATCATTTATATATATATTTGGAGTATATTTATCCTGGATCAATCAATAAATATGTCCGTGATCATCGTGGAGCTATTACAGAATGTGTAGTTCGCAATTTCACCCGCCATATTCTCTCTGGCTTGGCTTTCTTGCATGCCACAAAGACTATCCACAGGGACATTAAAGGGGCAAATTTGCTTGTTGATTCGGCAGGTGTTGTTAAGCTTGCTGATTTTGGGATGGCCAAAATTCTCACAGCACAATATGATCTATCTTTCAAGGGTAGTCCACACTGGATGGCTCCAGAGGTGATAAGGGCTGCAATGCAAAAAGAGACGAACCCCAATCACGCTTTTGCAGTAGATATATGGAGCTTAGGCTGTACTGTCATCGAGATGTTAAATGGAAAACCTCCTTGGAGTGAGTTTGAAGGGCCTCAAGCTATGTTCAAGGTCTTGAATAAAAGTCCGCCTATACCAGAAACATTATCTTCAGAAGGGAAGGACTTCCTCCATTGTTGCTTTCGAAGAAATCCGGCAGAGAGGCCCTCAGCGTCTAAGCTACTTGAGCACCCCTTTGTACAAAATGTTTCAGTAGCTTTCCATGCTTCTTCCTGTGCAACGAACTAA 1800 43.78 MTVPGEPATSVAQKSSLYQRVSDSKFSLNLPEPQRKLTRQRKLRYLTHKEAGLFSTQQPLPSPSSPPIAADHWSSVAIPQPLPLPDLCWIRRVASAASTSTSGQGHTLSPKGTTRRNGETVKSSTKILSTFQNKFSKEDNGGGNVDFKLRLWLTSVKAVASGSSSLSNSPKRSNTEEFFHSYVPTNSSKCYKNSDRGPLQDVNHEGERCKLTLNVSVRSAPTSALPSPTRSPQGSNTRDCFGTCMASQEYPVGSPVKAAHSSDQSPLRSPTARSPNLNSRCPNGIVAPESSYQANIAHPLPRPPGPNIHSFREKPNVSSLKGQWQKGKLIGRGAFGSVYLATNRETGALCAMKEVDLIPDDSKSAECIKQLEQEIKTLHQLKHQNIVQYYGSEIIDDHLYIYLEYIYPGSINKYVRDHRGAITECVVRNFTRHILSGLAFLHATKTIHRDIKGANLLVDSAGVVKLADFGMAKILTAQYDLSFKGSPHWMAPEVIRAAMQKETNPNHAFAVDIWSLGCTVIEMLNGKPPWSEFEGPQAMFKVLNKSPPIPETLSSEGKDFLHCCFRRNPAERPSASKLLEHPFVQNVSVAFHASSCATN 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11959759 11963132 - Conep04aG0160700.1 Cone4ag1555 436533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1555 599 SMART serkin_6 324 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1555 599 FunFam Mitogen-activated protein kinase kinase kinase 5 321 598 - -
Cone4ag1555 599 MobiDBLite consensus disorder prediction 99 123 - -
Cone4ag1555 599 MobiDBLite consensus disorder prediction 219 240 - -
Cone4ag1555 599 ProSitePatterns Protein kinases ATP-binding region signature. 330 353 IPR017441 GO:0005524(InterPro)
Cone4ag1555 599 ProSiteProfiles Protein kinase domain profile. 324 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1555 599 MobiDBLite consensus disorder prediction 258 279 - -
Cone4ag1555 599 SUPERFAMILY Protein kinase-like (PK-like) 320 589 IPR011009 -
Cone4ag1555 599 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 50 586 IPR050538 -
Cone4ag1555 599 Gene3D Transferase(Phosphotransferase) domain 1 321 597 - -
Cone4ag1555 599 MobiDBLite consensus disorder prediction 254 279 - -
Cone4ag1555 599 Pfam Protein kinase domain 325 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1555 Cone-Chr4:11959759 Cone8ag0112 Cone-Chr8:570627 2.85E-140 dispersed
Cone12ag0023 Cone-Chr12:182913 Cone4ag1555 Cone-Chr4:11959759 1.46E-93 wgd
Cone4ag1555 Cone-Chr4:11959759 Cone6ag1378 Cone-Chr6:11065392 1.58E-113 wgd
Cone4ag1555 Cone-Chr4:11959759 Cone7ag1397 Cone-Chr7:10015837 7.37E-305 wgd
Cone4ag1555 Cone-Chr4:11959759 Cone8ag0019 Cone-Chr8:140232 1.63E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82797 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1555 - - - 0.0