Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1559 ATGCAGAACAACGGCTCCGATCCGCAGCCGCCGCAGGAGCAGAATCAAAGGCATCAGCATCAGCAGCAGCCGCCACCGCCGCAGCCTCAGCAATGGATGGCGATGCAGTATCCTGCGCCACCGGCGGCGATGGTATTGCCACATCAGATGATACCGCCTCAGCATTACGTCCCTCCTCCGCCGCCTTTCGTGCCGTATCATCATCAGTACCAGCACCACCACGTACAACAACACGCTCAACAGCAACAAGGATCTAGCGGCGGAGAGAACAAGACGATTTGGGTGGGAGATTTGCACCATTGGATGGATGAGAGTTACCTTCATAGTTGCTTCGCTTCAGCTGGAGAGATTGCCTCCCTCAAGGTTATTCGCAATAAGCAAACTGGAATATCAGAATGCTATGGATTTGTTGAATTCTTTTCCCACGCAACAGCTGAGAAAGTCCTTCTGAACTATGCCAGCATGTTTATGCCAAATACAGAGCAGCCTTTCCGTCTGAACTGGGCGACACTTAGTACAGGGGATAAGCGCTCGGATAATGGTCCGGATATTTCCATCTTTGTAGGAGATTTAGCAGCAGATGTTACTGATAGTTTATTGCACGAAACTTTTGCTAGTAAATATCCCTCCGTTAAGACTGCAAAAGTTGTCTTTGATGCTAACACTGGCCGTTCCAAAGGTTATGGTTTTGTAAGGTTTGGGGATGATAATGAGAGGTCACAGGCTATGACCGAAATGAATGGCATGTATTGTTCAAGCAGAGCTATGCGCATCGGTGCGGCTACGCCCAGAAAGTCCTCTGTTTATCAGCAACAATATTCTACTCAAGGAGGATATGCATCAAATGGTTCCTTTGCACAAGGCTTCCAGCCCGAAGGAGATTCTACAAACACTACAATATTTGTTGGGGGGCTTGATCCTAATGCCACTGATGAAGATCTTAGGCAACCTTTCTCCCAGCATGGTGAAATAGTCTCTGTTAAGATACCAGTTGGGAAAGGATGTGGGTTTGTTCAATTTGCCAACAGAAATAATGCCGAGGAGGCTTTGCAGAAATTGAATGGAACTGTGATTGGGATGCAAACTATTCGCCTCTCATGGGGTCGAAATCCGGCAAATAAGCAGTTCCGGACCGATTTTGGAAACCAATGGAACAGCAGCCCCTATTACGGAGGGCCGGTTTATGATGGATACGGCTATGCTCTTCCTCCTTCTCATGATCCAAGCATATATGCTGCTGCTTATGGAACATACCCTATCTTTGGCACCCATCAACAGCAAGTAAGCTGA 1290 47.75 MQNNGSDPQPPQEQNQRHQHQQQPPPPQPQQWMAMQYPAPPAAMVLPHQMIPPQHYVPPPPPFVPYHHQYQHHHVQQHAQQQQGSSGGENKTIWVGDLHHWMDESYLHSCFASAGEIASLKVIRNKQTGISECYGFVEFFSHATAEKVLLNYASMFMPNTEQPFRLNWATLSTGDKRSDNGPDISIFVGDLAADVTDSLLHETFASKYPSVKTAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGMYCSSRAMRIGAATPRKSSVYQQQYSTQGGYASNGSFAQGFQPEGDSTNTTIFVGGLDPNATDEDLRQPFSQHGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGMQTIRLSWGRNPANKQFRTDFGNQWNSSPYYGGPVYDGYGYALPPSHDPSIYAAAYGTYPIFGTHQQQVS 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11979327 11982424 - Conep04aG0161100.1 Cone4ag1559 436537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1559 429 MobiDBLite consensus disorder prediction 1 21 - -
Cone4ag1559 429 CDD RRM2_SECp43_like 183 262 - -
Cone4ag1559 429 CDD RRM1_SECp43_like 92 170 - -
Cone4ag1559 429 MobiDBLite consensus disorder prediction 1 33 - -
Cone4ag1559 429 CDD RRM3_NGR1_NAM8_like 297 368 - -
Cone4ag1559 429 Gene3D - 183 259 IPR012677 -
Cone4ag1559 429 MobiDBLite consensus disorder prediction 71 90 - -
Cone4ag1559 429 FunFam Polyadenylate-binding protein RBP47B 90 170 - -
Cone4ag1559 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 FunFam Polyadenylate-binding protein RBP47 280 401 - -
Cone4ag1559 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 69 371 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cone4ag1559 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 Gene3D - 283 377 IPR012677 -
Cone4ag1559 429 SUPERFAMILY RNA-binding domain, RBD 183 370 IPR035979 GO:0003676(InterPro)
Cone4ag1559 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 MobiDBLite consensus disorder prediction 75 90 - -
Cone4ag1559 429 FunFam Polyadenylate-binding protein RBP47B 172 274 - -
Cone4ag1559 429 Gene3D - 64 181 IPR012677 -
Cone4ag1559 429 SMART rrm1_1 92 167 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 SMART rrm1_1 299 366 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 SMART rrm1_1 185 259 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 Pfam RNA recognition motif 186 256 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 Pfam RNA recognition motif 300 364 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 Pfam RNA recognition motif 93 159 IPR000504 GO:0003723(InterPro)
Cone4ag1559 429 SUPERFAMILY RNA-binding domain, RBD 58 171 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1559 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1110 Cone-Chr3:29669825 Cone4ag1559 Cone-Chr4:11979327 4.76E-143 dispersed
Cone4ag0182 Cone-Chr4:847768 Cone4ag1559 Cone-Chr4:11979327 1.84E-06 dispersed
Cone4ag1559 Cone-Chr4:11979327 Cone6ag0064 Cone-Chr6:343548 5.15E-129 dispersed
Cone12ag1105 Cone-Chr12:8978982 Cone4ag1559 Cone-Chr4:11979327 1.20E-147 wgd
Cone4ag1559 Cone-Chr4:11979327 Cone7ag1392 Cone-Chr7:9994572 4.72E-236 wgd
Cone4ag1559 Cone-Chr4:11979327 Cone8ag1145 Cone-Chr8:10021954 2.35E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117