Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1564 ATGTATTCTAGGAATGAGCATCACAAAGTCTCACTATCGGTGCTGCTCAAACGTGAATTGTATAGCGAGAAGATTGAGAGACCTGAAATTGTACACGGTCAGGCAAGTCAGAGTAAGAAAGGAGAAGATTTTACTTTTGTCAAGACTGAATGCCAGAGATTGGTTGGCGATGGAATCTCTACGTATTCAGTTTTTGGGCTGTTTGATGGTCACAATGGCTCCGCAGCTGCTATTTACTCTAAGGAGAATCTCTTAAACAATGTTCTAGCTGCTATTCCTTCAGATCTTAACAGAGATGAATGGGTTTCAGTATTGCCCAGGGCTTTAGTTGCAGGCTTTGTAAAGACTGACAAAGATTTCCAAGAAAAAGCAAAAACATCAGGAACAACTGTCACTTTTGTGATAATAGAAGGATTGGTGGTTACAGTTGCATCTGTTGGTGATTCCTGTTGCATTCTGGAACCTTACGAAGGCGGTGTTTATTACCTATCAGCAGATCATAGACTTGAATGCAACAAAGCAGAGAGGGATCGCATCGTTGCTAGTGGAGGTGAGGTGGGTCGACTCAATACTGGTGGTGGTGCAGAGATTGGCCCTTTGAGATGTTGGCCCGGTGGCCTGTGTCTATCACGTTCCATTGGGGATATGGATGTTGGCGAGTATATTGTTCCCGTTCCCTATGTAAAGCAAGTAAAGCTGTCTACAGCTGGTGGTAGGCTAATTATCTCAAGTGATGGCGTTTGGGATGCTCTGTCAGCTGAAATGGCTCTTGAATGTTGTCGTGGGATGCCCCCTGAACCTGCAGCTGCACAAATTGTCAAAGAAGCAGTTAGAGCCAAGGGACTTAGAGATGACACTACATGCATTGTCATTGACATTTTACCGCAAGAAAAGCCACCCGAGCCTTTGCCAGTACCAAAAAAACCGGTGAAAGGAATGTTCAAGTCCATATTTCGGAAAAAGCCATCTGAGTCATCTTCACATTCTGAAAAAGAATACATAGAGCCAGATATGACTGAAGAATTGTTCGAGGAAGGGTCTGCTATGCTTTCAGAAAGGTTAAACTCAGCGTATCCACTCTGCAACATGTTTAAGTTGTTTATATGTGCCATTTGCCAAATAGATATGAAACCCAGAGAGGGAATTTCCATACATGCCAGCTCATCTCACTCAGGGACATTGCGTCCATGGGACGGCCCCTTTTTATGTTTAAGCTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAAACCATCAGGAGATAGACTCAGCAGTGCAAGTGATGACTTGCCCACTTGCTACTTCCACCTTTCAGAGCACTAA 1323 43.99 MYSRNEHHKVSLSVLLKRELYSEKIERPEIVHGQASQSKKGEDFTFVKTECQRLVGDGISTYSVFGLFDGHNGSAAAIYSKENLLNNVLAAIPSDLNRDEWVSVLPRALVAGFVKTDKDFQEKAKTSGTTVTFVIIEGLVVTVASVGDSCCILEPYEGGVYYLSADHRLECNKAERDRIVASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPYVKQVKLSTAGGRLIISSDGVWDALSAEMALECCRGMPPEPAAAQIVKEAVRAKGLRDDTTCIVIDILPQEKPPEPLPVPKKPVKGMFKSIFRKKPSESSSHSEKEYIEPDMTEELFEEGSAMLSERLNSAYPLCNMFKLFICAICQIDMKPREGISIHASSSHSGTLRPWDGPFLCLSCQEKKEAMEGKKPSGDRLSSASDDLPTCYFHLSEH 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12007728 12011847 + Conep04aG0161600.1 Cone4ag1564 436542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1564 440 SMART PP2C_4 17 291 IPR001932 -
Cone4ag1564 440 PANTHER PROTEIN PHOSPHATASE 32 292 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone4ag1564 440 Pfam Protein phosphatase 2C 57 277 IPR001932 -
Cone4ag1564 440 Gene3D - 31 299 IPR036457 -
Cone4ag1564 440 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Cone4ag1564 440 SUPERFAMILY PP2C-like 36 293 IPR036457 -
Cone4ag1564 440 CDD PP2Cc 39 293 IPR001932 -
Cone4ag1564 440 FunFam probable protein phosphatase 2C 12 32 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1537 Cone-Chr1:57335055 Cone4ag1564 Cone-Chr4:12007728 1.14E-171 dispersed
Cone4ag1564 Cone-Chr4:12007728 Cone5ag0061 Cone-Chr5:306019 9.03E-164 dispersed
Cone17ag0840 Cone-Chr17:6701476 Cone4ag1564 Cone-Chr4:12007728 4.78E-242 wgd
Cone20ag0184 Cone-Chr20:794121 Cone4ag1564 Cone-Chr4:12007728 2.41E-245 wgd
Cone4ag1564 Cone-Chr4:12007728 Cone7ag1386 Cone-Chr7:9975888 6.92E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1564 - - - 0.0