Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1582 ATGACGCCCAGGAGTTTCAACCGTCTGATGATGTTTCCGGTGCAACCACTACTGACACGACGGCTATACAGCATTGTATCCAAACCCTCCAGTCCACGTCACCCCTCCACTTTCTTGAAAAACTATCCGTCAAATAGCCCAGCTCACGATCACGACCGTCCACGACCGGTACCAATCGTTGTGCAAGACTTTCTATCCAACAACTCAAAGAACATACAATGGAACAGCTCCATGGCGGCCATGAGAGAGATGATATTCCGAATTGCGGCGATACAACCGATTCACATCGACCCGGAGTTGATAAAGCCGCCAAAGAGGCGGAACACGAGGATTTCAAAGGATCCGCAGAGCGTAGCGGCCAGGCATAGGAGGGAGAGGATAAGCGAGAGGATAAGAATACTGCAAAGGCTTGTGCCTGGGGGGACTAAAATGGATACAGCTTCCATGTTGGATGAAGCAATTCATTATGTTAAATTCTTGAAGATTCAAGTACAGTCGTTGGAGAGGGCTTCGGCTAGTCGCCCGGCTGGTTCTTCTAATCCCGGGATTGGATTCCCCCGTGGCCATGTCCAGTGGTAG 579 50.43 MTPRSFNRLMMFPVQPLLTRRLYSIVSKPSSPRHPSTFLKNYPSNSPAHDHDRPRPVPIVVQDFLSNNSKNIQWNSSMAAMREMIFRIAAIQPIHIDPELIKPPKRRNTRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKIQVQSLERASASRPAGSSNPGIGFPRGHVQW 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12098263 12098841 - Conep04aG0163400.1 Cone4ag1582 436560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1582 192 SMART finulus 117 166 IPR011598 GO:0046983(InterPro)
Cone4ag1582 192 Pfam Helix-loop-helix DNA-binding domain 120 161 IPR011598 GO:0046983(InterPro)
Cone4ag1582 192 Gene3D - 105 176 IPR036638 GO:0046983(InterPro)
Cone4ag1582 192 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 44 176 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1582 192 MobiDBLite consensus disorder prediction 28 54 - -
Cone4ag1582 192 FunFam BHLH transcription factor 114 177 - -
Cone4ag1582 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 170 IPR036638 GO:0046983(InterPro)
Cone4ag1582 192 MobiDBLite consensus disorder prediction 28 44 - -
Cone4ag1582 192 MobiDBLite consensus disorder prediction 171 192 - -
Cone4ag1582 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0535 Cone-Chr16:7353606 Cone4ag1582 Cone-Chr4:12098263 5.39E-16 dispersed
Cone4ag1582 Cone-Chr4:12098263 Cone8ag0029 Cone-Chr8:191897 5.07E-36 dispersed
Cone4ag1582 Cone-Chr4:12098263 Cone4ag1587 Cone-Chr4:12126308 1.32E-09 proximal
Cone12ag0123 Cone-Chr12:659774 Cone4ag1582 Cone-Chr4:12098263 3.41E-54 wgd
Cone4ag1582 Cone-Chr4:12098263 Cone7ag1368 Cone-Chr7:9902948 1.45E-89 wgd
Cone4ag1582 Cone-Chr4:12098263 Cone8ag0130 Cone-Chr8:670288 7.86E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46026 PF03467 Smg4_UPF3 2.10E-50 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1582 - - - 0.0