Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1582 | ATGACGCCCAGGAGTTTCAACCGTCTGATGATGTTTCCGGTGCAACCACTACTGACACGACGGCTATACAGCATTGTATCCAAACCCTCCAGTCCACGTCACCCCTCCACTTTCTTGAAAAACTATCCGTCAAATAGCCCAGCTCACGATCACGACCGTCCACGACCGGTACCAATCGTTGTGCAAGACTTTCTATCCAACAACTCAAAGAACATACAATGGAACAGCTCCATGGCGGCCATGAGAGAGATGATATTCCGAATTGCGGCGATACAACCGATTCACATCGACCCGGAGTTGATAAAGCCGCCAAAGAGGCGGAACACGAGGATTTCAAAGGATCCGCAGAGCGTAGCGGCCAGGCATAGGAGGGAGAGGATAAGCGAGAGGATAAGAATACTGCAAAGGCTTGTGCCTGGGGGGACTAAAATGGATACAGCTTCCATGTTGGATGAAGCAATTCATTATGTTAAATTCTTGAAGATTCAAGTACAGTCGTTGGAGAGGGCTTCGGCTAGTCGCCCGGCTGGTTCTTCTAATCCCGGGATTGGATTCCCCCGTGGCCATGTCCAGTGGTAG | 579 | 50.43 | MTPRSFNRLMMFPVQPLLTRRLYSIVSKPSSPRHPSTFLKNYPSNSPAHDHDRPRPVPIVVQDFLSNNSKNIQWNSSMAAMREMIFRIAAIQPIHIDPELIKPPKRRNTRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKIQVQSLERASASRPAGSSNPGIGFPRGHVQW | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12098263 | 12098841 | - | Conep04aG0163400.1 | Cone4ag1582 | 436560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1582 | 192 | SMART | finulus | 117 | 166 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag1582 | 192 | Pfam | Helix-loop-helix DNA-binding domain | 120 | 161 | IPR011598 | GO:0046983(InterPro) | |
Cone4ag1582 | 192 | Gene3D | - | 105 | 176 | IPR036638 | GO:0046983(InterPro) | |
Cone4ag1582 | 192 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 44 | 176 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1582 | 192 | MobiDBLite | consensus disorder prediction | 28 | 54 | - | - | |
Cone4ag1582 | 192 | FunFam | BHLH transcription factor | 114 | 177 | - | - | |
Cone4ag1582 | 192 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 113 | 170 | IPR036638 | GO:0046983(InterPro) | |
Cone4ag1582 | 192 | MobiDBLite | consensus disorder prediction | 28 | 44 | - | - | |
Cone4ag1582 | 192 | MobiDBLite | consensus disorder prediction | 171 | 192 | - | - | |
Cone4ag1582 | 192 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 111 | 160 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0535 | Cone-Chr16:7353606 | Cone4ag1582 | Cone-Chr4:12098263 | 5.39E-16 | dispersed | |
Cone4ag1582 | Cone-Chr4:12098263 | Cone8ag0029 | Cone-Chr8:191897 | 5.07E-36 | dispersed | |
Cone4ag1582 | Cone-Chr4:12098263 | Cone4ag1587 | Cone-Chr4:12126308 | 1.32E-09 | proximal | |
Cone12ag0123 | Cone-Chr12:659774 | Cone4ag1582 | Cone-Chr4:12098263 | 3.41E-54 | wgd | |
Cone4ag1582 | Cone-Chr4:12098263 | Cone7ag1368 | Cone-Chr7:9902948 | 1.45E-89 | wgd | |
Cone4ag1582 | Cone-Chr4:12098263 | Cone8ag0130 | Cone-Chr8:670288 | 7.86E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46026 | PF03467 | Smg4_UPF3 | 2.10E-50 | CL0221 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1582 | - | - | - | 0.0 |