Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1586 ATGTCCAACTATTCCTTCTTAAACGACCAGCTCTCAAAGCGAACGTCAATTTTCGGATTACGCTTATGGGTTGTTCTGGGCATATGCGTGGGAACAGCCATAGTCCTTGTCCTCTTCCTAATCTCCCTCTGGTTCACTTCTCGCCGCAACAATTCCTCTAAACCTAAAAACCCCTCTCGTCAAAACACCTCCACTATTCCAAACGTTTCCAAGGAAATCCAAGAAATCCAAATCGACCCTTCTCTCCACACTTCTAACCCGGACCCGAAGACCCAATTAGTCCCCCAATCCGACCCGCATCCAGAAACAGAGCCCCTAGCCTTGCTTCTTCAGGCAGAGGAAGAAAGCCTAGTGGTTGGGCGTAATAGAATACACATAGAAATTGGAAAGGATCACCGAATTTCTTACCCTGAGCATGGAGGTGGATCATCGCATGGCAGCGGAGAAGCTCGCCTCGGTGATCAGACGGGGATTGCTGCGCCGGAAGTTTCTCATTTGGGGTGGGGCCATTGGTACACCCTTAGAGAGCTAGATGTCGCTACAAATGGGTTTGCCGATGAGAGTGTGATTGGTGAAGGTGGGTATGGAATTGTTTACCGTGGCGTTTTTGAAGATAACAGTAATGTTGCCGTCAAGAATTTGCTCAACAACAGGGGACAAGCTGAGAGGGAGTTTAAGGTCGAGGTTGAAGCAATCGGACGTGTTCGACATAAAAATTTAGTGAGATTGCTTGGTTATTGTGCTGAAGGAGCTCATAGGATGCTTGTTTACGAGTATGTTGACAATGGAAACTTGGAACAATGGCTTCATGGAGATGTTGGGCCTTGCAGCCCACTTACATGGGATATCCGTATTAATATAATACTGGGCACTGCAAAAGGGCTGGCATACTTGCACGAGGGGCTTGAGCCTAAGGTTGTTCACCGGGATATTAAGTCAAGTAACATCTTGCTCGATAGACAATGGCATCCAAAAGTTTCAGACTTTGGCCTAGCAAAGCTTCTAGGCTCGGAGATGAGCTATGTGACTACTCGTGTCATGGGAACATTTGGATATGTAGCTCCAGAATATGCCAGTACTGGCATGTTAAACGAAAGAAGCGATGTGTATGGTTTTGGGATTCTCATTATGGAGATAATTTCTGGTAGAAATCCCGTGGATTATAATCGCCCTACTGGAGAGGTGAACCTAGTGGAGTGGCTTAAGACAATGGTTACAAATAGGAATGCAGAGGGGGTTCTGGATCCAAAGTTGCCCGAAAAGCCTTCTTCGAGAGCACTCAAGCGGGTTCTTTTAGTAGCTTTACGTTGTGTGGACCCGAATGCACAAAAGAGGCCGAAGATGGGGCATGTCATACATATGCTTGAAGCCGATGAGTTTCCTTTTCGAGATGACCGGAGAGGAGGGAGAGAACAGGGCCAGTCACAACGTGAAAGGTCTCAAGGGCAAGCTAATGGCCAGGCTGGTGAGTGA 1473 47.32 MSNYSFLNDQLSKRTSIFGLRLWVVLGICVGTAIVLVLFLISLWFTSRRNNSSKPKNPSRQNTSTIPNVSKEIQEIQIDPSLHTSNPDPKTQLVPQSDPHPETEPLALLLQAEEESLVVGRNRIHIEIGKDHRISYPEHGGGSSHGSGEARLGDQTGIAAPEVSHLGWGHWYTLRELDVATNGFADESVIGEGGYGIVYRGVFEDNSNVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWDIRINIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWHPKVSDFGLAKLLGSEMSYVTTRVMGTFGYVAPEYASTGMLNERSDVYGFGILIMEIISGRNPVDYNRPTGEVNLVEWLKTMVTNRNAEGVLDPKLPEKPSSRALKRVLLVALRCVDPNAQKRPKMGHVIHMLEADEFPFRDDRRGGREQGQSQRERSQGQANGQAGE 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12122766 12125324 - Conep04aG0163800.1 Cone4ag1586 436564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1586 490 Gene3D Phosphorylase Kinase; domain 1 162 259 - -
Cone4ag1586 490 ProSiteProfiles Protein kinase domain profile. 184 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1586 490 Gene3D Transferase(Phosphotransferase) domain 1 260 466 - -
Cone4ag1586 490 MobiDBLite consensus disorder prediction 459 490 - -
Cone4ag1586 490 MobiDBLite consensus disorder prediction 50 102 - -
Cone4ag1586 490 FunFam Probable serine/threonine-protein kinase At1g01540 164 259 - -
Cone4ag1586 490 CDD STKc_IRAK 190 456 - -
Cone4ag1586 490 FunFam Putative receptor-like serine/threonine-protein kinase 260 470 - -
Cone4ag1586 490 PANTHER OS01G0323000 PROTEIN 5 479 IPR052232 -
Cone4ag1586 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1586 490 MobiDBLite consensus disorder prediction 459 474 - -
Cone4ag1586 490 SUPERFAMILY Protein kinase-like (PK-like) 166 456 IPR011009 -
Cone4ag1586 490 ProSitePatterns Protein kinases ATP-binding region signature. 190 212 IPR017441 GO:0005524(InterPro)
Cone4ag1586 490 MobiDBLite consensus disorder prediction 50 98 - -
Cone4ag1586 490 SMART serkin_6 184 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1586 490 Pfam Protein kinase domain 186 453 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1586 490 MobiDBLite consensus disorder prediction 475 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1169 Cone-Chr10:8511197 Cone4ag1586 Cone-Chr4:12122766 4.18E-176 dispersed
Cone3ag1161 Cone-Chr3:30254998 Cone4ag1586 Cone-Chr4:12122766 4.81E-175 dispersed
Cone4ag1586 Cone-Chr4:12122766 Cone8ag1197 Cone-Chr8:10205338 5.44E-174 dispersed
Cone17ag0849 Cone-Chr17:6756706 Cone4ag1586 Cone-Chr4:12122766 5.31E-224 wgd
Cone20ag0197 Cone-Chr20:847514 Cone4ag1586 Cone-Chr4:12122766 1.22E-35 wgd
Cone4ag1586 Cone-Chr4:12122766 Cone7ag1363 Cone-Chr7:9883587 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82798 PF04548 AIG1 2.40E-79 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1586 - - - 0.0