Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1588 ATGCAAGGGCAGAGGAGTAGCATAGGTTCCTTGCCTGAAATCCTAAACTTTGACCATGGATCTTCATCATCAAGTAATACGGCTTTAGATCAGCAGATCTGCTGGAATGGTATGCAGAGGCCTGCAGATAATCAAATTAACTTACTCGCACCAAGTAATATGAATATCACATATGCAAACTCTGTGAACCTTGACCAAGAAAACTTGAGTAGATGGAGCTTAGGCGAACCTAGCTCAAGCAATTCACAAAGTGAAGTTAACCGTGAGGGTCTGAAAGCAGAAACTGGATGGTCTTCTTCTGCAAGTCCTTGTACTGGAGCTGGTCCTAGGTTACAAGACCAGCACTACGAACCATCTAATAGTATATCACTTGACAGTGTTAATGTCAGTAATATGTTTATGCGGAGTTCTGATTCAGAGGTTGTTCCGCAGAATCTCAATCTTGATGGAGGTCTTTTAACTCATGGAGGTAGTAGTAATCAAATCCTCGATGGCCCGAACATGTTCAAGTCTAATAGACAAGAACATGGGTGGAATCCATCTCCTAGTGCTCCTGGTTCTTTTGTACTTCCTTCTGGAAATAATGGCTTTTTGGTGGAAGGAAATGATAGCAGAGCGGGTCCGTCAGTGGATGGCCGTAGGGCATCTTGTAAAAGAAAGGCACTCGAGGGAAGTGTTGCCCAATCTTCAGCAAGTGGTCGCAGTATTTATTCACAACATACAGATGGTAGTGCAGAATCTTCTCTAAGTTCCTCCTATAATGCTGGAGCTAATTTAAGAATATCTGGTACAATGGATCAGCAAGCAAATCCAAGATTTGGACCCAGCTCAAGAGAAGTAAATTCTGATTACCTCCGTGGATCAAGTCTGGCAGAAAACTTGGAAAATCCTCGTAGAAATCTCCGTGTACGGTTAAATCCCCCTACTCAACAAGGTACTAATTCTCATACCTTATTCTCTACAGAGAATACAGCAAGGAATTCTGGTATTTCATCTTCCCAACTTTCAGGTGGCCCACTTTCTATTGAGCCTGCTATAGATAATTTGATTTCTCAAAGCCAGCCTGTTATCATCCATGTTCCAAATTTACGTAGCGATGTGCAGTCACTTAGGTGGAATGGAGGAGCTTCTAGTTCAAGATCTGGTGGTTCATTAAACTCTGTTGGAAATCGACCCTCTATTCGTCATGCAGGATCTAACTTGAGAAGCATGTCTGGGAACATTTTGGAGAACAACCCTGTTTTTGTCCCGGCAACCGAGTTGAGAAATATGGTACGAAATTCAACATATAGAACTTTACCCAGTGAAAATGCAAGTATTCCTGGAGGTGTGGCTTCTACATCTCGGACTACCCCAAATTCTGTGGGCCCACATCCACCTTCTGCTCCATGGGCTTCTCACGACCATCCTACTCCACAGTTTCCATTGAGATTATCGGAATATGTTCGTAGGCAATTGTTTTCTCCCAGTGGGTTCGAGTCAGGAGGACCGTCTACAGGTAATTATACACCACTGCATTCGGGTGCAGCTTCCACCCAGGATATGGTCCTTCCATCTGGAACCAGAAACCAGGGGCTGTTGCACCCACGGCCAGCTTTGTGGATGGATAGACAAGGTGGCACTGGAGCAGGTCTTTCCTATTCGTTACGAACCTTGGCTGCTATTGGTGAAGGAAATGGAAGTAACAGGCTTGTATCAGAGCAGATTCGCAATGTCTTGGGTCTCATGCGTAGAGGCGATAACTTACGATTTGAGGATGTTATGATTCTGGACCAAACGGTATTCTCTGGGGTGGCTGATATACATGACCGGCACAGGGACATGCGTCTTGATGTTGATAACATGTCTTATGAGGAGCTATTGGCTCTGGAAGAGCGCATCGGAAATGTCAGCACAGGATTGAGTGAAGAGATAATACAAACTCGACTTAAGCCGCACAAGTATTCTCCTCTAGAATCTCAGCCAGAGGCAGAAGCTTCAGAGCCTTGCTGTATTTGTCAGGAAGAGTACAATGATGGAGAAGATCTTGGAAAACTTGAATGTGGACATGATTTTCATGCTCACTGTATTAAACAGTGGTTGATTCATAAGAATTTGTGTCCGATTTGTAAAACTACAGCCCTTGCAACCTGA 2133 44.07 MQGQRSSIGSLPEILNFDHGSSSSSNTALDQQICWNGMQRPADNQINLLAPSNMNITYANSVNLDQENLSRWSLGEPSSSNSQSEVNREGLKAETGWSSSASPCTGAGPRLQDQHYEPSNSISLDSVNVSNMFMRSSDSEVVPQNLNLDGGLLTHGGSSNQILDGPNMFKSNRQEHGWNPSPSAPGSFVLPSGNNGFLVEGNDSRAGPSVDGRRASCKRKALEGSVAQSSASGRSIYSQHTDGSAESSLSSSYNAGANLRISGTMDQQANPRFGPSSREVNSDYLRGSSLAENLENPRRNLRVRLNPPTQQGTNSHTLFSTENTARNSGISSSQLSGGPLSIEPAIDNLISQSQPVIIHVPNLRSDVQSLRWNGGASSSRSGGSLNSVGNRPSIRHAGSNLRSMSGNILENNPVFVPATELRNMVRNSTYRTLPSENASIPGGVASTSRTTPNSVGPHPPSAPWASHDHPTPQFPLRLSEYVRRQLFSPSGFESGGPSTGNYTPLHSGAASTQDMVLPSGTRNQGLLHPRPALWMDRQGGTGAGLSYSLRTLAAIGEGNGSNRLVSEQIRNVLGLMRRGDNLRFEDVMILDQTVFSGVADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEIIQTRLKPHKYSPLESQPEAEASEPCCICQEEYNDGEDLGKLECGHDFHAHCIKQWLIHKNLCPICKTTALAT 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12129337 12132298 - Conep04aG0164000.1 Cone4ag1588 436566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1588 710 SMART ring_2 663 703 IPR001841 -
Cone4ag1588 710 Pfam Ring finger domain 663 704 IPR001841 -
Cone4ag1588 710 MobiDBLite consensus disorder prediction 73 118 - -
Cone4ag1588 710 MobiDBLite consensus disorder prediction 225 251 - -
Cone4ag1588 710 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 213 709 IPR045191 GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone4ag1588 710 MobiDBLite consensus disorder prediction 168 191 - -
Cone4ag1588 710 MobiDBLite consensus disorder prediction 433 455 - -
Cone4ag1588 710 MobiDBLite consensus disorder prediction 433 470 - -
Cone4ag1588 710 FunFam E3 ubiquitin-protein ligase MBR2 629 708 - -
Cone4ag1588 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 708 IPR013083 -
Cone4ag1588 710 SUPERFAMILY RING/U-box 662 707 - -
Cone4ag1588 710 ProSiteProfiles Zinc finger RING-type profile. 663 704 IPR001841 -
Cone4ag1588 710 MobiDBLite consensus disorder prediction 1 23 - -
Cone4ag1588 710 MobiDBLite consensus disorder prediction 73 107 - -
Cone4ag1588 710 MobiDBLite consensus disorder prediction 168 190 - -
Cone4ag1588 710 MobiDBLite consensus disorder prediction 371 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1588 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0257 Cone-Chr10:1238383 Cone4ag1588 Cone-Chr4:12129337 5.48E-32 dispersed
Cone13ag0314 Cone-Chr13:2519642 Cone4ag1588 Cone-Chr4:12129337 5.15E-30 dispersed
Cone14ag1042 Cone-Chr14:8796149 Cone4ag1588 Cone-Chr4:12129337 3.76E-29 dispersed
Cone17ag1078 Cone-Chr17:8059314 Cone4ag1588 Cone-Chr4:12129337 2.95E-35 dispersed
Cone19ag0355 Cone-Chr19:2918922 Cone4ag1588 Cone-Chr4:12129337 2.08E-30 dispersed
Cone19ag1263 Cone-Chr19:8637935 Cone4ag1588 Cone-Chr4:12129337 2.47E-26 dispersed
Cone20ag0634 Cone-Chr20:3811066 Cone4ag1588 Cone-Chr4:12129337 2.98E-34 dispersed
Cone3ag0283 Cone-Chr3:1474412 Cone4ag1588 Cone-Chr4:12129337 6.70E-30 dispersed
Cone3ag1184 Cone-Chr3:30512251 Cone4ag1588 Cone-Chr4:12129337 7.87E-81 dispersed
Cone4ag1588 Cone-Chr4:12129337 Cone4ag1858 Cone-Chr4:13328339 3.58E-32 dispersed
Cone10ag0997 Cone-Chr10:6797150 Cone4ag1588 Cone-Chr4:12129337 4.34E-81 wgd
Cone17ag0852 Cone-Chr17:6762013 Cone4ag1588 Cone-Chr4:12129337 5.33E-124 wgd
Cone20ag0198 Cone-Chr20:851450 Cone4ag1588 Cone-Chr4:12129337 1.90E-142 wgd
Cone4ag1588 Cone-Chr4:12129337 Cone7ag1361 Cone-Chr7:9875390 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55