Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1592 ATGGAAGCTGGGGAGAATTGTTGCGTGAAGGTCGCCGTTCATATCCGGCCGCTCATCGGCGATGAGCGCCTTCAAGGCTGTAAGGATTGCGTCACTGTCGTCTCCGGCAAGCCTCAGGTACAGATTGGCACACATTCCTTTACTTTTGATCATGTATATGGAAGCACTGCTACTCCCTCTTCTTCCATGTATGAAGAATGTGTCTCCCCATTGGTAGATGGTTTGTTTCAAGGATACAATGCTACTGTTCTTGCTTATGGTCAGACTGGATCTGGAAAAACGTACACTATGGGCACTGGCTTGAAAGATGGCTGTCAAACTGGGATTGTACCTCTAGTTATGAATGCTTTGTTCAGCAAGATTGAAACTTTAAAGCATCAAACAGATTTCCAATTGCATGTTTCCTTTATTGAGATTCTCAAAGAAGAAGTACGGGATTTGCTGGATTCTAATTCTCTAAGCAAACCAGAGGGCGCAAATGGACATGCAGGGAAAGTTGGTATCCCAGGGAAACCACCAATACAAATCCGTGAATCATCCAATGGTGTGATTACTTTGGCGGGGTCTACAGAAGTTAGTGTTAGCACACTAAAAGAGATGGCCGCTTGCCTCGAACAGGGTTCACAGAGCAGGGCAACGGGGAGTACAAATATGAATAATCAGTCAAGTCGGTCACATGCCATCTTCACCATCACGTTAGAGCAAATGCGCAAGCTTACTCCGGCTTTCCCTGGAGATAGCAATGCGGTTGATTGTATGAATGAAGAGTATCTATGTGCCAAGTTGCATTTAGTTGATCTTGCTGGGTCAGAGCGAGCCAAGAGAACAGGTTCTGATGGTTTACGGTTTAAGGAAGGGGTTCATATTAACAAGGGTCTTCTTGCACTTGGTAATGTCATCAGTTCTCTTGGTGATGAGAAGAAGCGCAAAGAAGGTGTTCATGTTCCTTACCGGGATAGTAAACTTACTCGGCTTTTGCAGGATTCACTTGGCGGTAACAGCAGAACTGTTATGATAGCCTGCATCAGTCCTGCCGATATCAATGCTGAGGAAACCCTTAACACCCTAAAATATGCAAACCGTGCTCGCAATATCCAAAATAAACCAGTAGTAAACAGAGACCCCATGTCGAATGAGATGCTAAAGATGCGCCAACAGCTAGAATGTCTTCAGGCAGAACTTTTTGCTCGTGGAGGGGGGTCTTCATCTGATGAAGTACAGGTTCTCAAGGAAAGGATTGCATGGCTTGAAGCTACTAACGAGGATCTCTGTCGGGAACTTCATGAATATCGTAGCAGATGCAGTGGTCAAGTGCCGTGTGAAACAAATCATCGAGATGATAATTGTTGCTCTGTCAAAAGTGATGGGATGAAAAGGGGCTTGCAGAGTATAGAAGCACCTGATTATCCCTTAGGTGAAAGCATGGCAGGGGTTCCTGGGGAAATTGATGAAGTGGCAAAAGAATGGGAGCACACACTTCTACAAAACAGCATGGACAAAGAAATGCATGAACTAAATAAACGTCTAGAACAAAAGGAGTCGGAAATGAAACTCTTTGGAGGATATGACACCGCTGCACTGAAGCAGCATTTTGGGAAGAAAATCATGGATCTTGAGGATGAGAAAAGAGCTGTTCAGCAAGAGAGAGATCGTTTGTTGACTGCAGTTGAAAATCTAGCTGCATCTTCTGATGGACAAACACAGAAAATGCAAGATATTCATACACACAAACTAAAAGCACTTGAAGCTCAGATTCTGGATCTTAAGAAGAAACAAGAGAGCCAGGTTCAGCTTTTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGAGATTACAAGATGAGATTCAGTTCATAAAAGCACAAAAGGTTCAATTACAACAAAGGATGAAACAAGAGGCAGAACAATTTCGGCACTGGAAAGCCTCTCGAGAGAAGGAGCTGCTTCAACTAAGGAAGGAGGGCCGGAGAAATGAGTATGAAAGGCATAAGCTACAAGCCTTAAATCAACGCCAGAAAATGGTTCTTCAGAGAAAGACAGAAGAGGCTGCAATGGCGACAAAGAGGCTGAAAGAGTTACTAGAAGCTCGCAAGTCTAATGCACGCGACCACTCAGCTATTACAAACGGCAATGGAGCAAATGGGCAGATCAATGAGAAATCCTTACAACGCTGGCTTGATCAAGAGTTGGAAGTCATGGTGAATGTGCATGAAGTACGTTTTGAATATGAAAAACAAAGCCATGTGCGAGCTGCATTAGCAGAAGAGTTAGCTGTGCTGAAGCAAGTTGATGAGTTTGCATCAAAGGGCCTCAGCCCTCCAAGGGGAAAAAATGGTTTCTCAAGAGTGTCCTCTATGTCACCAAATGCAAGAATGGCTCGAATATCTTCACTTGAGAACATGCTGAGCATATCATCAAATTCACTTGTAGCCATGGCTTCCCAACTTTCAGAAGCAGAAGAACGAGAACGTGGGTTCACCAATAGGGGTCGTTGGAACCAGTTGCGGTCAATGGGAGATGCAAAGAGCTTACTTCAACACATGTTCAACTCCCTTTCAGATGCAAGGTGTCAATTATGGGAGAAGGGAGTAGAAATGAAGGAAATGAAAGAGCAACTTAAAGAACTAGTAGGACTGTTGAGGCAGAGTGAGACCCGAAGAAAGGAAGTTGAGAAGGAGCTAAGATTAAGAGAGCAGGCAGTTGCAATAGCATTGGTTTCATCCACATCTGCTCACCATGAACATGAAAATACAAACGCTTCATTAAAACACTTTGCTGATGAAATGAGTGGTCCCTTGTCTCCAATGTCTGTCCCAGCTCCAAAGCAACTAAAGTACACGGCTGGCATTGCAAATGGCTCGACAAGAGAATCAGCAGCATTTATAGATAAAACGCGAAAGATGGTTCCAATGGGGCAATTATCGACAAAAAAGATGGCAGCTGTGGGCCAAGCAGGAAAGTTATGGAGGTGGAAAAGAAGTCATCATCAATGGCTGTTACAGTTCAAATGGAAGTGGCAGAAGCCATGGAGACTTTCAGAATTGATTAGACATAGTGATGAAACGATCATGAGAGGAAAGCCCCGTAGACAGTCTCTACCAACTGTGAAGTGA 3114 43.96 MEAGENCCVKVAVHIRPLIGDERLQGCKDCVTVVSGKPQVQIGTHSFTFDHVYGSTATPSSSMYEECVSPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLKDGCQTGIVPLVMNALFSKIETLKHQTDFQLHVSFIEILKEEVRDLLDSNSLSKPEGANGHAGKVGIPGKPPIQIRESSNGVITLAGSTEVSVSTLKEMAACLEQGSQSRATGSTNMNNQSSRSHAIFTITLEQMRKLTPAFPGDSNAVDCMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISSLGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLECLQAELFARGGGSSSDEVQVLKERIAWLEATNEDLCRELHEYRSRCSGQVPCETNHRDDNCCSVKSDGMKRGLQSIEAPDYPLGESMAGVPGEIDEVAKEWEHTLLQNSMDKEMHELNKRLEQKESEMKLFGGYDTAALKQHFGKKIMDLEDEKRAVQQERDRLLTAVENLAASSDGQTQKMQDIHTHKLKALEAQILDLKKKQESQVQLLKQKQKSDEAAKRLQDEIQFIKAQKVQLQQRMKQEAEQFRHWKASREKELLQLRKEGRRNEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSNARDHSAITNGNGANGQINEKSLQRWLDQELEVMVNVHEVRFEYEKQSHVRAALAEELAVLKQVDEFASKGLSPPRGKNGFSRVSSMSPNARMARISSLENMLSISSNSLVAMASQLSEAEERERGFTNRGRWNQLRSMGDAKSLLQHMFNSLSDARCQLWEKGVEMKEMKEQLKELVGLLRQSETRRKEVEKELRLREQAVAIALVSSTSAHHEHENTNASLKHFADEMSGPLSPMSVPAPKQLKYTAGIANGSTRESAAFIDKTRKMVPMGQLSTKKMAAVGQAGKLWRWKRSHHQWLLQFKWKWQKPWRLSELIRHSDETIMRGKPRRQSLPTVK 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12148739 12157168 + Conep04aG0164400.1 Cone4ag1592 436570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1592 1037 SMART kinesin_4 6 373 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1592 1037 FunFam kinesin-like protein KIN-4A isoform X1 2 393 - -
Cone4ag1592 1037 Coils Coil 578 636 - -
Cone4ag1592 1037 Pfam Kinesin motor domain 16 365 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1592 1037 Coils Coil 528 558 - -
Cone4ag1592 1037 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1592 1037 PRINTS Kinesin heavy chain signature 261 279 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1592 1037 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1592 1037 PRINTS Kinesin heavy chain signature 315 336 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1592 1037 ProSitePatterns Kinesin motor domain signature. 260 271 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cone4ag1592 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 396 IPR027417 -
Cone4ag1592 1037 Coils Coil 406 426 - -
Cone4ag1592 1037 Gene3D Kinesin motor domain 2 393 IPR036961 -
Cone4ag1592 1037 Coils Coil 676 696 - -
Cone4ag1592 1037 Coils Coil 495 515 - -
Cone4ag1592 1037 ProSiteProfiles Kinesin motor domain profile. 8 365 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone4ag1592 1037 Coils Coil 866 900 - -
Cone4ag1592 1037 CDD KISc_KIF4 7 366 - -
Cone4ag1592 1037 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 918 1028 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1592 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1297 Cone-Chr4:10705010 Cone4ag1592 Cone-Chr4:12148739 7.04E-283 dispersed
Cone4ag1592 Cone-Chr4:12148739 Cone7ag0858 Cone-Chr7:6570791 4.96E-283 dispersed
Cone4ag1592 Cone-Chr4:12148739 Cone6ag1410 Cone-Chr6:11340659 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g731 Blo01g01519 . Bda01g00576 . Bpe02g00438 . . Bma01g02265 . . Cma01g01823 Cma09g00251 Car01g01425 . . Cpe06g00172 . . . . . . . . . . . . . . . Cone4ag1592 . . . Lsi04g01531 . . . Blo17g00895 . . . . . . . . Cmo01g01880 Cmo09g00243 . . . Car09g00208 . Cpe02g00191 Bhi09g03295 . . . . Mch11g0322 . Cla05g02066 Cam05g2217 Cec05g2236 Cco05g2277 Clacu05g2210 Cmu05g2076 Cre05g2202 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005992 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 0 2 2 38