Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1594 ATGGCTATAGAGCTTCTGGTGGGTTTCACAGGAGATCGTTTCGCCCCGAACATGGAAGAAAACGCCGGCGTTACCGCTTTACAAGAAGCTGCATCCGCCGGAATTAAGAGTGCCGAAAGTTTTCTCCAATTGATGTCTACGAATCCAAATTATCTATGCAGAGAGTCATCTTCGACTTCGAGCTCTAATGCGGAATGTAACGCCGTTGCAGATGCGGTTGTCAACAAGTTCAAAAAGGTTATTTCTTTACTGGACCGGGATCGGACCGGCCATGCGCGGTTCAGAAAAGCCCCGGTTGCTACTCCGCCGCAACAACAACATCCGACCCCAAAGCCGTTTGTTCCAGCTTTCGTTCCGAAGCCTGAATCTCAAAAAGTTTCAGCTTTTAAGGTCTACTGTCCGACGCCGGAAGTACGTTTACCTCCTCTGCCTCAAAATCATAGCCAGATCCATAAAAGCTCTGCTCAAGCAGTGCCTAAAATGGGCCTTGTAGAGAAAGAGGAGCCTACTACGACAATCACCTTCTCGACTTCGGCGCCAATATCAGCCGCGAATTCCTACATCTCATCGTTGACAGGATATTCCGACAGTATGCAGCCGTCATCTGGGTTTCAAATGACACATATGTCCCAGGATTCATCCGGCGGTAAGCCCCCTCCGTCCACATCATCGCTTAAGAGGAAGTGCAGCTCCATGGATCATGGATCGGGTTTGAAATGTGCTACATCTTCGGGAAGATGCCACTGCTCTAAAAAGAGGAAAAACAGAGTAAAGAGAGTGATGAGAGTTCCTGCTATTAGCATGAAAATGGCGGATATTCCACCCGACGATTATTCCTGGAGAAAGTATGGACAGAAACCCATCAAAGGCTCCCCTCATCCAAGAGGATATTATAAGTGTAGCAGCGTGAGGGGTTGTTCAGCGCGGAAACACGTGGAGCGTGCCTTAGACGATCCTACCATGCTCATTGTAACATACGAAAACGATCATAATCACGCTGCTCACTCCGTCACGGAGGCAGCGACGGCAGATCCGGTGCACGAATTGTCTTAA 1053 48.91 MAIELLVGFTGDRFAPNMEENAGVTALQEAASAGIKSAESFLQLMSTNPNYLCRESSSTSSSNAECNAVADAVVNKFKKVISLLDRDRTGHARFRKAPVATPPQQQHPTPKPFVPAFVPKPESQKVSAFKVYCPTPEVRLPPLPQNHSQIHKSSAQAVPKMGLVEKEEPTTTITFSTSAPISAANSYISSLTGYSDSMQPSSGFQMTHMSQDSSGGKPPPSTSSLKRKCSSMDHGSGLKCATSSGRCHCSKKRKNRVKRVMRVPAISMKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCSARKHVERALDDPTMLIVTYENDHNHAAHSVTEAATADPVHELS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12164332 12165919 - Conep04aG0164600.1 Cone4ag1594 436572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1594 350 Pfam Plant zinc cluster domain 226 272 IPR018872 -
Cone4ag1594 350 SMART WRKY_cls 274 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1594 350 FunFam WRKY transcription factor 65 258 335 - -
Cone4ag1594 350 Gene3D WRKY domain 263 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1594 350 MobiDBLite consensus disorder prediction 199 230 - -
Cone4ag1594 350 ProSiteProfiles WRKY domain profile. 269 335 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1594 350 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 25 338 IPR044810 GO:0003700(InterPro)
Cone4ag1594 350 SUPERFAMILY WRKY DNA-binding domain 271 333 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone4ag1594 350 Pfam WRKY DNA -binding domain 276 332 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1594 Cone-Chr4:12164332 Cone7ag1766 Cone-Chr7:11645922 1.72E-69 dispersed
Cone4ag1594 Cone-Chr4:12164332 Cone6ag1414 Cone-Chr6:11365253 2.16E-93 wgd
Cone4ag1594 Cone-Chr4:12164332 Cone7ag1354 Cone-Chr7:9836188 7.26E-225 wgd
Cone4ag1594 Cone-Chr4:12164332 Cone9ag1341 Cone-Chr9:10068119 1.19E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46030 PF00650 CRAL_TRIO 2.10E-28 CL0512 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1594 - - - 0.0