Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1603 ATGGTGCTTGGACCAAGTTCTTCGAGATTGATAGAAGCAAACTCTGTGTTTGTAGAGCAGATTCATGTAAGAGAAGATGGGGATACAGATGTTCATCTCTATGCGTTCGACGAAATGCCTCAACTAAGCTACGAAGCAAATTGGACCGTGTCCGACTACTTGATTGTTGCATCATATCATAGAAAGGAATTTTCCTTGTGGCTAAACAAGGGTTCAAAAATTCGAATGAGATGGGAAACTCGGACCAGTACTTTGAAACAGCTTGAAGTTGCTATGATTAAAGGGGAGAAAAATCGTGTAACATTGATGCCAACATTGATAAGTTCCTCTGATTCCCTCTCACCCAACGAGCCACTTAACGGTACGGAAGCCGAATACATCATTCTGGAAGATGACAAGTACAATATATTGGTTGTAAATGGAAATGCAAGAAGTATAATAATGACAATTAGTGTTAACGTTTCATCAAAGATGTATGATATCAGTAAAGCTAAACGCATGTGTTCTACTGTAAAGGATTCTTGTGGCCTCAGCATTCAATTTCCAGGAACACGATATGTTGTACTAACAACCCCGAATAACGGGGCTCTTGGCGAATGGAACATAGAGCTTTCTTATGTTGCTCGCGCCGTAACTTACATTGCAGTTTTAGCATTTATTATGATTATAATCTTTGTGGTTCTGAAGTATCTGGGAGCATGTGAGAATGAGGATAATGTAGAAGAGAGAGAGACAACGGATGTAAATACCGAGACCGATCCATTAATTTCAAATAAGCCAATTCATGTTACATATGGTACGAGGGGAGAGGATGAAGAATCAGGAGCATCTAGTAGCTCTTCAGATCAGGAGCTATATGATGAAAAGCTTTGTGTGATCTGCTATGACGAACAGAGAAATTGCTTCTTTGTTCCTTGTGGTCATTGTGCAACTTGCTATGACTGTGCTCAAAGGATTATGGAGGGGGATAACAAGGTTTGTCCTATATGTCGCAGGCTGATACACAAAGTAAGAAGATTGTTCAACTCTTGA 1032 39.92 MVLGPSSSRLIEANSVFVEQIHVREDGDTDVHLYAFDEMPQLSYEANWTVSDYLIVASYHRKEFSLWLNKGSKIRMRWETRTSTLKQLEVAMIKGEKNRVTLMPTLISSSDSLSPNEPLNGTEAEYIILEDDKYNILVVNGNARSIIMTISVNVSSKMYDISKAKRMCSTVKDSCGLSIQFPGTRYVVLTTPNNGALGEWNIELSYVARAVTYIAVLAFIMIIIFVVLKYLGACENEDNVEERETTDVNTETDPLISNKPIHVTYGTRGEDEESGASSSSSDQELYDEKLCVICYDEQRNCFFVPCGHCATCYDCAQRIMEGDNKVCPICRRLIHKVRRLFNS 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12201736 12203736 + Conep04aG0165500.1 Cone4ag1603 436581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1603 343 SUPERFAMILY RING/U-box 283 337 - -
Cone4ag1603 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 342 IPR013083 -
Cone4ag1603 343 SMART ring_2 291 330 IPR001841 -
Cone4ag1603 343 PANTHER OS05G0521000 PROTEIN 1 341 - GO:0007049(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone4ag1603 343 Pfam Zinc finger, C3HC4 type (RING finger) 288 337 - -
Cone4ag1603 343 Pfam E3 ubiquitin-protein ligase APD1-4, N-terminal 32 98 IPR032008 -
Cone4ag1603 343 ProSiteProfiles Zinc finger RING-type profile. 291 331 IPR001841 -
Cone4ag1603 343 Pfam E3 ubiquitin-protein ligase APD1-4, middle domain 124 227 IPR032010 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1603 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1403 Cone-Chr13:10138362 Cone4ag1603 Cone-Chr4:12201736 4.53E-42 dispersed
Cone19ag1393 Cone-Chr19:9172102 Cone4ag1603 Cone-Chr4:12201736 3.18E-39 dispersed
Cone1ag0569 Cone-Chr1:5779245 Cone4ag1603 Cone-Chr4:12201736 2.97E-41 dispersed
Cone4ag1603 Cone-Chr4:12201736 Cone5ag1077 Cone-Chr5:4784911 7.28E-41 dispersed
Cone12ag0153 Cone-Chr12:781533 Cone4ag1603 Cone-Chr4:12201736 1.33E-38 wgd
Cone17ag0871 Cone-Chr17:6906433 Cone4ag1603 Cone-Chr4:12201736 2.29E-118 wgd
Cone20ag0218 Cone-Chr20:934045 Cone4ag1603 Cone-Chr4:12201736 3.61E-142 wgd
Cone4ag1603 Cone-Chr4:12201736 Cone7ag1347 Cone-Chr7:9803405 1.40E-217 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g688 . Blo12g00977 . Bda03g00193 . . Bma04g00146 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1603 Cone7ag1347 . Cone20ag0218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015386 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2 12