Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1604 ATGAGCGCCCAATCTCGATTTCATGAATCTAAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAGATGAAGAAGCGAACCGTCTCTTACGATCTCAACCGGCGTCTACGGCAGCGTCTCCCTCATCGGACGACGTGGACGAAGTTGCATTTGAGGATAGAGAGAAGATCGCGATAGTCGATGTGGACTCAGTCGACGCGGAGGATTCCACGACGGTACCACCGTTCTCGTGGAAAAAGCTGTGGTTATTCACTGGCCCTGGGTTTTTGATGAGCATAGCGTTCCTGGATCCGGGGAACCTCGAAGGAGATCTTCAAGCAGGAGCCATTGCAGGCTATTCGCTGCTATGGATACTGATGTGGGCCACGTTTATGGGCCTGCTGATTCAGCTGTTGTCGGCGAGGGTTGGGGTGGCGACTGGCCGCCATTTGGCTGAGCTCTGTCGGGAGGAGTATCCGAATTGGGCTAGATTGTTGTTGTGGTTCATGGCGGAGGTGGCCTTGATTGGTGCTGATATCCAGGAGGTCATTGGAAGTGCAATTGCTATCCAAATTCTCAGTCATGGAGTCTTACCGCTTTGGGCTGGAGTCATTATTACGGCGTCGGATTGTTTCATTTTCTTATTTCTTGAGAACTATGGAGTGCGGAAGCTAGAAGCTGTATTTGCTGTCCTTATTGCAACTATGGCTTTATCTTTCGCCTGGATGTTTGGTGACACAGAGCCCAATGGGAAAGAACTTTTAATGGGTATTTTGATTCCAAAGCTGAGCTCAAAAACAATCAGACAAGCAGTAGGAGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTTTTGCACTCTGCTTTGGTGCAATCAAGGAACATCGATCCCCACAAAAAAGGACGAGTTCAGGAGGCTATCAATTATTACTCCATTGAAGCATCAATAGCACTTCTAATCTCTTTCATTATAAATCTGTTTGTGACAGCTGTATTTGCTAAGGGATTTTATGGCACTAAAATAGCCAATAGTATAGGTTTGGTAAATGCGGGGCAGTACCTACAGGAGAAATATGGGGGAGGATTTCCAATTCTTTATATCTGGGGCATTGGCTTGTTAGCAGCTGGACAGAGTAGCACAATAACTGGAACATATGCCGGGCAGTTTATCATGGGAGGTTTTCTCAACCTTCGGTTGAAAAAATGGTTGAGGGCAGTGATCACAAGGAGTTTTGCAATTGCACCAACTATGATTGTAGCTCTTGTCTTCAATACCTCCGAGTCTTCATTGGATGTGTTGAATGAGTGGCTTAATGTGCTTCAGTCAATGCAAATTCCTTTTGCTCTTATTCCCCTACTTACATTGGTGGCGAAGGAGCATGTCATGGGAGATTTTAAGATCGGGCCCATTCTTGAGAGGGTTGCCTGGACTGTTGCTGCACTGGTGATGGTGATTAATGGTTATCTTTTGATGGATTTCTTTGCATCCGAAGTTAAAGGAATGCTATTCGGTTCTCTAGTGTGCTTGGGCACATTTGCTTATACTGCATTTATTGCATATCTTATCTCGCATAGGAGTGCTCTTCCTTCCATTTGGTTGACTCTGCTGTCAAAACGCCTCGGCTACTCCGGCAACTGA 1626 46.43 MSAQSRFHESKDEEEEEEEEEEERDEEANRLLRSQPASTAASPSSDDVDEVAFEDREKIAIVDVDSVDAEDSTTVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWILMWATFMGLLIQLLSARVGVATGRHLAELCREEYPNWARLLLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITASDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTEPNGKELLMGILIPKLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPHKKGRVQEAINYYSIEASIALLISFIINLFVTAVFAKGFYGTKIANSIGLVNAGQYLQEKYGGGFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRAVITRSFAIAPTMIVALVFNTSESSLDVLNEWLNVLQSMQIPFALIPLLTLVAKEHVMGDFKIGPILERVAWTVAALVMVINGYLLMDFFASEVKGMLFGSLVCLGTFAYTAFIAYLISHRSALPSIWLTLLSKRLGYSGN 541
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 12204799 12208562 + Conep04aG0165600.1 Cone4ag1604 436582
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1604 541 NCBIfam Nramp family divalent metal transporter 88 455 - -
Cone4ag1604 541 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 55 523 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 Hamap Divalent metal cation transporter MntH [mntH]. 69 490 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 Coils Coil 8 35 - -
Cone4ag1604 541 PRINTS Natural resistance-associated macrophage protein signature 162 188 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 PRINTS Natural resistance-associated macrophage protein signature 192 211 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 PRINTS Natural resistance-associated macrophage protein signature 266 289 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 PRINTS Natural resistance-associated macrophage protein signature 400 417 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 PRINTS Natural resistance-associated macrophage protein signature 372 391 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 PRINTS Natural resistance-associated macrophage protein signature 217 238 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 PRINTS Natural resistance-associated macrophage protein signature 434 453 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 MobiDBLite consensus disorder prediction 1 50 - -
Cone4ag1604 541 Pfam Natural resistance-associated macrophage protein-like 104 464 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Cone4ag1604 541 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 81 458 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1604 Cone-Chr4:12204799 Cone6ag1517 Cone-Chr6:11979193 6.73E-97 dispersed
Cone12ag0154 Cone-Chr12:785958 Cone4ag1604 Cone-Chr4:12204799 4.22E-271 wgd
Cone4ag1604 Cone-Chr4:12204799 Cone6ag1430 Cone-Chr6:11472817 2.00E-263 wgd
Cone4ag1604 Cone-Chr4:12204799 Cone7ag1346 Cone-Chr7:9794788 0 wgd
Cone4ag1604 Cone-Chr4:12204799 Cone9ag1360 Cone-Chr9:10187459 7.42E-259 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1604 K21398 - mdm:103455925 840.106