Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1604 | ATGAGCGCCCAATCTCGATTTCATGAATCTAAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAGATGAAGAAGCGAACCGTCTCTTACGATCTCAACCGGCGTCTACGGCAGCGTCTCCCTCATCGGACGACGTGGACGAAGTTGCATTTGAGGATAGAGAGAAGATCGCGATAGTCGATGTGGACTCAGTCGACGCGGAGGATTCCACGACGGTACCACCGTTCTCGTGGAAAAAGCTGTGGTTATTCACTGGCCCTGGGTTTTTGATGAGCATAGCGTTCCTGGATCCGGGGAACCTCGAAGGAGATCTTCAAGCAGGAGCCATTGCAGGCTATTCGCTGCTATGGATACTGATGTGGGCCACGTTTATGGGCCTGCTGATTCAGCTGTTGTCGGCGAGGGTTGGGGTGGCGACTGGCCGCCATTTGGCTGAGCTCTGTCGGGAGGAGTATCCGAATTGGGCTAGATTGTTGTTGTGGTTCATGGCGGAGGTGGCCTTGATTGGTGCTGATATCCAGGAGGTCATTGGAAGTGCAATTGCTATCCAAATTCTCAGTCATGGAGTCTTACCGCTTTGGGCTGGAGTCATTATTACGGCGTCGGATTGTTTCATTTTCTTATTTCTTGAGAACTATGGAGTGCGGAAGCTAGAAGCTGTATTTGCTGTCCTTATTGCAACTATGGCTTTATCTTTCGCCTGGATGTTTGGTGACACAGAGCCCAATGGGAAAGAACTTTTAATGGGTATTTTGATTCCAAAGCTGAGCTCAAAAACAATCAGACAAGCAGTAGGAGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTTTTGCACTCTGCTTTGGTGCAATCAAGGAACATCGATCCCCACAAAAAAGGACGAGTTCAGGAGGCTATCAATTATTACTCCATTGAAGCATCAATAGCACTTCTAATCTCTTTCATTATAAATCTGTTTGTGACAGCTGTATTTGCTAAGGGATTTTATGGCACTAAAATAGCCAATAGTATAGGTTTGGTAAATGCGGGGCAGTACCTACAGGAGAAATATGGGGGAGGATTTCCAATTCTTTATATCTGGGGCATTGGCTTGTTAGCAGCTGGACAGAGTAGCACAATAACTGGAACATATGCCGGGCAGTTTATCATGGGAGGTTTTCTCAACCTTCGGTTGAAAAAATGGTTGAGGGCAGTGATCACAAGGAGTTTTGCAATTGCACCAACTATGATTGTAGCTCTTGTCTTCAATACCTCCGAGTCTTCATTGGATGTGTTGAATGAGTGGCTTAATGTGCTTCAGTCAATGCAAATTCCTTTTGCTCTTATTCCCCTACTTACATTGGTGGCGAAGGAGCATGTCATGGGAGATTTTAAGATCGGGCCCATTCTTGAGAGGGTTGCCTGGACTGTTGCTGCACTGGTGATGGTGATTAATGGTTATCTTTTGATGGATTTCTTTGCATCCGAAGTTAAAGGAATGCTATTCGGTTCTCTAGTGTGCTTGGGCACATTTGCTTATACTGCATTTATTGCATATCTTATCTCGCATAGGAGTGCTCTTCCTTCCATTTGGTTGACTCTGCTGTCAAAACGCCTCGGCTACTCCGGCAACTGA | 1626 | 46.43 | MSAQSRFHESKDEEEEEEEEEEERDEEANRLLRSQPASTAASPSSDDVDEVAFEDREKIAIVDVDSVDAEDSTTVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWILMWATFMGLLIQLLSARVGVATGRHLAELCREEYPNWARLLLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITASDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTEPNGKELLMGILIPKLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPHKKGRVQEAINYYSIEASIALLISFIINLFVTAVFAKGFYGTKIANSIGLVNAGQYLQEKYGGGFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRAVITRSFAIAPTMIVALVFNTSESSLDVLNEWLNVLQSMQIPFALIPLLTLVAKEHVMGDFKIGPILERVAWTVAALVMVINGYLLMDFFASEVKGMLFGSLVCLGTFAYTAFIAYLISHRSALPSIWLTLLSKRLGYSGN | 541 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 12204799 | 12208562 | + | Conep04aG0165600.1 | Cone4ag1604 | 436582 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1604 | 541 | NCBIfam | Nramp family divalent metal transporter | 88 | 455 | - | - | |
| Cone4ag1604 | 541 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 55 | 523 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | Hamap | Divalent metal cation transporter MntH [mntH]. | 69 | 490 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | Coils | Coil | 8 | 35 | - | - | |
| Cone4ag1604 | 541 | PRINTS | Natural resistance-associated macrophage protein signature | 162 | 188 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | PRINTS | Natural resistance-associated macrophage protein signature | 192 | 211 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | PRINTS | Natural resistance-associated macrophage protein signature | 266 | 289 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | PRINTS | Natural resistance-associated macrophage protein signature | 400 | 417 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | PRINTS | Natural resistance-associated macrophage protein signature | 372 | 391 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | PRINTS | Natural resistance-associated macrophage protein signature | 217 | 238 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | PRINTS | Natural resistance-associated macrophage protein signature | 434 | 453 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Cone4ag1604 | 541 | Pfam | Natural resistance-associated macrophage protein-like | 104 | 464 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Cone4ag1604 | 541 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 81 | 458 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag1604 | Cone-Chr4:12204799 | Cone6ag1517 | Cone-Chr6:11979193 | 6.73E-97 | dispersed | |
| Cone12ag0154 | Cone-Chr12:785958 | Cone4ag1604 | Cone-Chr4:12204799 | 4.22E-271 | wgd | |
| Cone4ag1604 | Cone-Chr4:12204799 | Cone6ag1430 | Cone-Chr6:11472817 | 2.00E-263 | wgd | |
| Cone4ag1604 | Cone-Chr4:12204799 | Cone7ag1346 | Cone-Chr7:9794788 | 0 | wgd | |
| Cone4ag1604 | Cone-Chr4:12204799 | Cone9ag1360 | Cone-Chr9:10187459 | 7.42E-259 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1604 | K21398 | - | mdm:103455925 | 840.106 |