Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1609 | ATGGCTCTCGAAGCTCTCAAATCGCCACCCACGCCATCGCCTTCTTTCCACTACGACGAACCTAACGAGCCATGGACCAAGCGCAAGCGCTCGAAGCGTCCAAGGATCGACCAGGCTCCAACGGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTAGCTCGCGGAGGAGAAGGCGGCGCTGCTGCTGCATCTACGACAGATTTCACCGCAGCCGTGCGCCGACGAGATCTTCCACCTCCTTCGGATCAGTATCAGCTGATGAAACAGAGCCACAAGTGCTCTGTTTGCGACCGGACGTTTTCGTCTTATCAGGCTTTAGGCGGACACAAAGCCAGCCATAGGAAACACGCCGGAGGTGAAGATCACCAATCGACTTCCTCCGCCACCACGAATTCCGCCGCGGCAGCAGCCACCACATCCTCCGCCGGCGGTAGATCTCATGAGTGCTCTATCTGCCACAAATCATTCCCCACCGGTCAAGCCTTAGGCGGACACAAGCGCTGCCATTACGAAGGAGGAAACAAGGAGAGCAGTAACGGCGGTGCTGCTGCATCCTCCTCCTCCGGCGTAGGTTCAATCCAGATCGTCTCCGTCATCCATCGCGACTTCGATCTAAACCTACCGGCGTTGCCTGATTTCTGTCCGAAATTCTTCGTATCTGGCGACGACGAGGTGGAGAGTCCTCACCCGAGGAAGAAGAATCGCGTCTTGTTGCCCCCTAAAGTTGAAATCTCTGGAAATCACTGA | 750 | 56.27 | MALEALKSPPTPSPSFHYDEPNEPWTKRKRSKRPRIDQAPTEEEYLALCLIMLARGGEGGAAAASTTDFTAAVRRRDLPPPSDQYQLMKQSHKCSVCDRTFSSYQALGGHKASHRKHAGGEDHQSTSSATTNSAAAAATTSSAGGRSHECSICHKSFPTGQALGGHKRCHYEGGNKESSNGGAAASSSSGVGSIQIVSVIHRDFDLNLPALPDFCPKFFVSGDDEVESPHPRKKNRVLLPPKVEISGNH | 249 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12234412 | 12235322 | - | Conep04aG0166100.1 | Cone4ag1609 | 436587 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1609 | 249 | SUPERFAMILY | beta-beta-alpha zinc fingers | 91 | 170 | IPR036236 | - | |
Cone4ag1609 | 249 | Gene3D | Classic Zinc Finger | 90 | 170 | - | - | |
Cone4ag1609 | 249 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 92 | 122 | IPR013087 | - | |
Cone4ag1609 | 249 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cone4ag1609 | 249 | MobiDBLite | consensus disorder prediction | 224 | 239 | - | - | |
Cone4ag1609 | 249 | Pfam | C2H2-type zinc finger | 148 | 171 | IPR013087 | - | |
Cone4ag1609 | 249 | Pfam | C2H2-type zinc finger | 92 | 116 | IPR013087 | - | |
Cone4ag1609 | 249 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 148 | 170 | IPR013087 | - | |
Cone4ag1609 | 249 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 26 | 211 | IPR044653 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
Cone4ag1609 | 249 | MobiDBLite | consensus disorder prediction | 224 | 249 | - | - | |
Cone4ag1609 | 249 | MobiDBLite | consensus disorder prediction | 123 | 147 | - | - | |
Cone4ag1609 | 249 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 150 | 170 | IPR013087 | - | |
Cone4ag1609 | 249 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 94 | 114 | IPR013087 | - | |
Cone4ag1609 | 249 | MobiDBLite | consensus disorder prediction | 108 | 147 | - | - | |
Cone4ag1609 | 249 | SMART | c2h2final6 | 148 | 170 | IPR013087 | - | |
Cone4ag1609 | 249 | SMART | c2h2final6 | 92 | 114 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag1609 | Cone-Chr4:12234412 | Cone5ag0284 | Cone-Chr5:1212846 | 1.58E-10 | dispersed | |
Cone12ag1052 | Cone-Chr12:8745171 | Cone4ag1609 | Cone-Chr4:12234412 | 1.28E-47 | wgd | |
Cone17ag0883 | Cone-Chr17:6995691 | Cone4ag1609 | Cone-Chr4:12234412 | 4.46E-69 | wgd | |
Cone20ag0229 | Cone-Chr20:990984 | Cone4ag1609 | Cone-Chr4:12234412 | 4.00E-68 | wgd | |
Cone4ag1609 | Cone-Chr4:12234412 | Cone7ag1343 | Cone-Chr7:9773254 | 7.75E-119 | wgd | |
Cone4ag1609 | Cone-Chr4:12234412 | Cone8ag1084 | Cone-Chr8:9781974 | 2.37E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46032 | PF07491 | PPI_Ypi1 | 2.00E-17 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1609 | - | - | - | 0.0 |