Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1609 ATGGCTCTCGAAGCTCTCAAATCGCCACCCACGCCATCGCCTTCTTTCCACTACGACGAACCTAACGAGCCATGGACCAAGCGCAAGCGCTCGAAGCGTCCAAGGATCGACCAGGCTCCAACGGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTAGCTCGCGGAGGAGAAGGCGGCGCTGCTGCTGCATCTACGACAGATTTCACCGCAGCCGTGCGCCGACGAGATCTTCCACCTCCTTCGGATCAGTATCAGCTGATGAAACAGAGCCACAAGTGCTCTGTTTGCGACCGGACGTTTTCGTCTTATCAGGCTTTAGGCGGACACAAAGCCAGCCATAGGAAACACGCCGGAGGTGAAGATCACCAATCGACTTCCTCCGCCACCACGAATTCCGCCGCGGCAGCAGCCACCACATCCTCCGCCGGCGGTAGATCTCATGAGTGCTCTATCTGCCACAAATCATTCCCCACCGGTCAAGCCTTAGGCGGACACAAGCGCTGCCATTACGAAGGAGGAAACAAGGAGAGCAGTAACGGCGGTGCTGCTGCATCCTCCTCCTCCGGCGTAGGTTCAATCCAGATCGTCTCCGTCATCCATCGCGACTTCGATCTAAACCTACCGGCGTTGCCTGATTTCTGTCCGAAATTCTTCGTATCTGGCGACGACGAGGTGGAGAGTCCTCACCCGAGGAAGAAGAATCGCGTCTTGTTGCCCCCTAAAGTTGAAATCTCTGGAAATCACTGA 750 56.27 MALEALKSPPTPSPSFHYDEPNEPWTKRKRSKRPRIDQAPTEEEYLALCLIMLARGGEGGAAAASTTDFTAAVRRRDLPPPSDQYQLMKQSHKCSVCDRTFSSYQALGGHKASHRKHAGGEDHQSTSSATTNSAAAAATTSSAGGRSHECSICHKSFPTGQALGGHKRCHYEGGNKESSNGGAAASSSSGVGSIQIVSVIHRDFDLNLPALPDFCPKFFVSGDDEVESPHPRKKNRVLLPPKVEISGNH 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12234412 12235322 - Conep04aG0166100.1 Cone4ag1609 436587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1609 249 SUPERFAMILY beta-beta-alpha zinc fingers 91 170 IPR036236 -
Cone4ag1609 249 Gene3D Classic Zinc Finger 90 170 - -
Cone4ag1609 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 122 IPR013087 -
Cone4ag1609 249 MobiDBLite consensus disorder prediction 1 39 - -
Cone4ag1609 249 MobiDBLite consensus disorder prediction 224 239 - -
Cone4ag1609 249 Pfam C2H2-type zinc finger 148 171 IPR013087 -
Cone4ag1609 249 Pfam C2H2-type zinc finger 92 116 IPR013087 -
Cone4ag1609 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
Cone4ag1609 249 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 26 211 IPR044653 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cone4ag1609 249 MobiDBLite consensus disorder prediction 224 249 - -
Cone4ag1609 249 MobiDBLite consensus disorder prediction 123 147 - -
Cone4ag1609 249 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Cone4ag1609 249 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Cone4ag1609 249 MobiDBLite consensus disorder prediction 108 147 - -
Cone4ag1609 249 SMART c2h2final6 148 170 IPR013087 -
Cone4ag1609 249 SMART c2h2final6 92 114 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1609 Cone-Chr4:12234412 Cone5ag0284 Cone-Chr5:1212846 1.58E-10 dispersed
Cone12ag1052 Cone-Chr12:8745171 Cone4ag1609 Cone-Chr4:12234412 1.28E-47 wgd
Cone17ag0883 Cone-Chr17:6995691 Cone4ag1609 Cone-Chr4:12234412 4.46E-69 wgd
Cone20ag0229 Cone-Chr20:990984 Cone4ag1609 Cone-Chr4:12234412 4.00E-68 wgd
Cone4ag1609 Cone-Chr4:12234412 Cone7ag1343 Cone-Chr7:9773254 7.75E-119 wgd
Cone4ag1609 Cone-Chr4:12234412 Cone8ag1084 Cone-Chr8:9781974 2.37E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46032 PF07491 PPI_Ypi1 2.00E-17 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1609 - - - 0.0