Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1610 ATGGCTTCGGAGCAACCTCTGAAAAAGCGGAAGCTATACGAACCCGTACCAGAGCCACAGGCACCGCAGGGGCTTTCTGAAGTTCAGCAGCACCCTAAACCACTATCGCTGTCCCAAGAGGAAATCCTCGTCAAACGGAAGAACAGAGACGGGATTAGAAGCGTTTATGAATGTTACAAGCGAATTAGGGCTTTACTTTCCCACAAAGTGAACGGTGCTCGTACACCTGATATCGAGCAAGCGTATCTCTCTCTCATTACTGCTTCAAGAGGGTGTACTAGTGTACAGCGTATTGTGGCTGACCTCATTCCTCGATATGCATCTCACTGTCCAGCTGCTCTTGAAACTGCAGCCAATGTTGTTATTAATATGCACAATTGGAGCGTGGCAATTATAAATAGAGGAGAGGATGCTGATGGTGTTGCATTTGATACTGCCAAGACCTGTATTTCTGGTCTTGTTGACATCTGTAGTGCTGTTTCGTCTGAGGCATCCAAATCAACTGTTATTCAAGGCATTTGCTCTGCAGTCTTTCGGAACACGCTCATGTTCTTCATGTCCTCTTTTGAGGGAAATGATATGTTTCAGATTGTTGATAAGCAAATTTTGAAAATTCAAGATTCTGTTGACGCCTTTTCCAAGCTAATGCAAAAGTTTACAGATGAAGATGGACCACCATTGGTTAAACTGTCAAAGTTCCGTGCACTCAGTCTATTTTGGCTTTTCTTTTCTTGTCCTAAAAATTTGCTCGGGGCCTGTTTCGAGCTTTTCAGTACGCTTGGGGAGGGAGTTCATAAAGAAGGATTGCATTTCCTTACTCTTGTTACATGCAGTCTTGACAATAAGGGTAGTCATCAAGATGATAAGACAAGTGGTGCTCCAGTATCACGCTTGGGATCTAATGGAACAAGCCCTAATGAGGATGGGGTTGATACTCAAATATCAGATGGGAACTCTGTTTCTGGAGATGGATCCTCTGCTTCAAGAAACTGCTTGTTGGGCTTGGTTCTTGGCAAAGATCAATCTCTTTTGAGCTGGACATTTTCATGGCATAGAAAGTTACGTAATTTGTCATCCTTCAAAGCTCAAGCAGATATTAAATCTGCTTTTGATGGTTTAATGAACTTAGAAGATAATCAAGTGGGCATTGATGAGGATACTTCAGATCCATCCAAATGTGTTAGTCAACAATATTCAGTGCGTGGGGTCCCCAGCCAATGTGAAATTACCCACAAACTGTCTAGCAAAGATGGTCACTTGAGAATGTTTGATGGAACCCGTGAAGCTGGTATTACGAACACCATTTCTGGTCAACATCACTCTGCCGCTCCTCTCGATAGTAATCCCAATGCAAATGGAGCAGGATCTAATCATGATAGTGGTACCTCCATGGAATTAGAACCTCAAGAGCTTAGAGATCCACATGGTCGGCCTTCCATTTCTAGGGACCTAGTAAATAGCCAGATGATATCACCTTTCACAAAAGCACCATCAGACTTGCGGAGTAATTCATTTGAGAAGAATAAAGTTCCAAATTCAGATTACGGCATGTCTGCGTCAAGGTCATCTACTGGAGGTGCCGGTAACGATTTCACCTCTCCTAACCATCATTCAGCAATACCATATGCTACCGATACAACTCAGAATTCATGGTGCTCTGATGGTGACCCCTCAGCCATGGATATCTTCCCTGCTTCTAAACAGCTCTGGGTAGGGCTTTTAGGCTCAGATACATCTGAAGCTCATGTAAGGTACCAGTTTGAGAGGTTTGGTCCTGTCGATCAATTCTGTTTCTTTCCAGTTAAAGGGTTTGCCTTAGTTGAGTACATGCACATCATCGATGCTATAAGGGCTCGGGAATATTTGCGTGGACAATTTCAATGGTGTATAAAGTTCATGGACATAGGTCTAGGAACTAGAGGTGTTATAAATGGCGTTGCTGTTGGTTCTAGTTCTCATGTTTATATTGGCAATGTTTTGAGCCATTGGGTTAAGGATGAGATTCTTTATGAATCGGGGAAATTTTTCAACATTGCTCCGTACATGGTTACTGATCTTAGCAGTGAAGGTGCACTTCTGATGGACTTTGAAACTCCTGAAGAAGCTGTGGCTGTAATGGCACACCTCAGACACTATCGTAAAGAAAGGAGTAACAGCCATTGGCCATCAGGACCCGCTAATGCTGCATTGCCTTATATAGATGGTGGAAGGCCAGCATGTGCCCCTTCCAGTGTTGGTTTCAGAAGCATTAACTCTGGAAATATGTCTAATAGCATGATCGGATCACCTCATCCACCCATTGTGTCTGAGAGTCCTACTGGAATCTCTCAGACTAGAATGTCTGAGCTATCTTCCTTTGTCCATTCATTACGTAATAAGTATAATATAAATCAGAACTCAAGTTATTTTGACAATTATATATCTGGAAGTCACAGCACTGCTGTAATGAGGGAAGAAGACAATGTACCTTTGAATACACTGTGGATTAGTTTTCCAAGTGTTAGCAGCCCTTTTGTCTCTGAAGATGAGTTGATGAGAATTTGTAATCTTGCTATTGCTAATACTGGGTCTGTGGTCAAGTTGACTCGAGCAGACATGCAGTTTGGTTGTGGCTGGTTTGTTGAGTGCAGCAGTGTAGATGGTGCAAAAACTGTCTTGAAGAATCTCCGTAGCTGTCCTGGAATCTTCCTCTGGACCGAATTCAGAGTACAAAATGAGAATCACGGAACCTCACAACAAGGTGGATATGCATATCAATCAAACTGGGCTGTTTCTGGTTGTACAGAGACCGAAGTTGGGGTAAGAAAAGACAATAACACAGTAGTGGATCATTCGCAAGGAGGTGCTCATGTTGTTTCTGTTTCCACTGAACAAGCATGGTCGTACATAAAACCTGACATGGAAATCCATAATTTACCAGGTTCTGTTCCATGTATGCCGGCATTACCAGGACCCCCCATTCCACCTCCTCAACAGATGCAGTCATCTCCATTTGTACAACCTCCATACCCTCCTCCAAACAGTTCTTGGGATCCAAGGGCTTTTAATCAACATATGCCTTTGAACCTGATACCACCAGGCGTTATGCCTAGTACTCTTCATGGTAGTGTTGTTGCAAGTCCATATATGCCCACTTCTGTGACACCAGTTGCACTTAGACCGGGTGCTCCAGTTCATTATGACCCTATGTTCACCCAGCATTTAGCACCACCACCTTTACCATCTGCATTACCTCCTCAACCTGAAATGCCTCCTCCATTACCACCGTCTCCTCCTCCTCTACCTCAATCACTGCCACCTCAGGTTCCTCCACCACCTCCCAGTTCTCCTCCTCCTCATCCACCTCCACCTGCCATAGAATCATCTGAAATTCAAAATTCCAGTCAGCCCACCCAATATTCTTGGCAGGGAACTCTGTCTAAAAGCGGAGTTCATTACTGCACAATTTATGCTCACAGAGTCGACTCAGATATTTGCAAATATTCAAATGCCATGCCTGAACCTACAGAATGGCCAGCAAAATTAGATATGACCAAACGCACAGATTTTCGGCATGTGAAGACAACATTTAATAGTACTCCACCACAAAAAAGGGAAATATGTCAGTTGATCCCGTCTACTGCTGGAGATCAAAAAGGATTTCAGGATTTTGTAACGTACTTGAAGCAGAGGGAATGTGCAGGAGTGATAAAAGTAGGCACCACAAGATCCATATGGGCAAGGCTTCTCTTTTTGCTTCCATATTCGCAAGACTTGTGTTCATTGCTCTCCATATCACCTGGGCCATCTGATGGTCTGATCGCTCTGGTTTTGCCCAAAGAAACAAATTATGAATGGACTTGA 3843 43.51 MASEQPLKKRKLYEPVPEPQAPQGLSEVQQHPKPLSLSQEEILVKRKNRDGIRSVYECYKRIRALLSHKVNGARTPDIEQAYLSLITASRGCTSVQRIVADLIPRYASHCPAALETAANVVINMHNWSVAIINRGEDADGVAFDTAKTCISGLVDICSAVSSEASKSTVIQGICSAVFRNTLMFFMSSFEGNDMFQIVDKQILKIQDSVDAFSKLMQKFTDEDGPPLVKLSKFRALSLFWLFFSCPKNLLGACFELFSTLGEGVHKEGLHFLTLVTCSLDNKGSHQDDKTSGAPVSRLGSNGTSPNEDGVDTQISDGNSVSGDGSSASRNCLLGLVLGKDQSLLSWTFSWHRKLRNLSSFKAQADIKSAFDGLMNLEDNQVGIDEDTSDPSKCVSQQYSVRGVPSQCEITHKLSSKDGHLRMFDGTREAGITNTISGQHHSAAPLDSNPNANGAGSNHDSGTSMELEPQELRDPHGRPSISRDLVNSQMISPFTKAPSDLRSNSFEKNKVPNSDYGMSASRSSTGGAGNDFTSPNHHSAIPYATDTTQNSWCSDGDPSAMDIFPASKQLWVGLLGSDTSEAHVRYQFERFGPVDQFCFFPVKGFALVEYMHIIDAIRAREYLRGQFQWCIKFMDIGLGTRGVINGVAVGSSSHVYIGNVLSHWVKDEILYESGKFFNIAPYMVTDLSSEGALLMDFETPEEAVAVMAHLRHYRKERSNSHWPSGPANAALPYIDGGRPACAPSSVGFRSINSGNMSNSMIGSPHPPIVSESPTGISQTRMSELSSFVHSLRNKYNINQNSSYFDNYISGSHSTAVMREEDNVPLNTLWISFPSVSSPFVSEDELMRICNLAIANTGSVVKLTRADMQFGCGWFVECSSVDGAKTVLKNLRSCPGIFLWTEFRVQNENHGTSQQGGYAYQSNWAVSGCTETEVGVRKDNNTVVDHSQGGAHVVSVSTEQAWSYIKPDMEIHNLPGSVPCMPALPGPPIPPPQQMQSSPFVQPPYPPPNSSWDPRAFNQHMPLNLIPPGVMPSTLHGSVVASPYMPTSVTPVALRPGAPVHYDPMFTQHLAPPPLPSALPPQPEMPPPLPPSPPPLPQSLPPQVPPPPPSSPPPHPPPPAIESSEIQNSSQPTQYSWQGTLSKSGVHYCTIYAHRVDSDICKYSNAMPEPTEWPAKLDMTKRTDFRHVKTTFNSTPPQKREICQLIPSTAGDQKGFQDFVTYLKQRECAGVIKVGTTRSIWARLLFLLPYSQDLCSLLSISPGPSDGLIALVLPKETNYEWT 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12242782 12248387 + Conep04aG0166200.1 Cone4ag1610 436588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1610 1280 Gene3D - 558 640 IPR012677 -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 1067 1119 - -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 1 33 - -
Cone4ag1610 1280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 567 625 IPR000504 GO:0003723(InterPro)
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 465 479 - -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 437 540 - -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 987 1007 - -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 437 464 - -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 481 540 - -
Cone4ag1610 1280 SUPERFAMILY RNA-binding domain, RBD 553 626 IPR035979 GO:0003676(InterPro)
Cone4ag1610 1280 SMART rrm1_1 568 636 IPR000504 GO:0003723(InterPro)
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 1 15 - -
Cone4ag1610 1280 Pfam SPOC domain 1127 1270 IPR012921 -
Cone4ag1610 1280 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 48 1233 IPR052586 GO:0043130(PANTHER)
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 288 323 - -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 1120 1135 - -
Cone4ag1610 1280 CDD RRM_SF 569 626 - -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 284 323 - -
Cone4ag1610 1280 MobiDBLite consensus disorder prediction 1062 1135 - -
Cone4ag1610 1280 CDD SPOC_FPA-like 1135 1272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1610 K18667 - - csv:101209442 1276.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1610 Cone-Chr4:12242782 Cone7ag1342 Cone-Chr7:9761066 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g658 Blo01g01497 . Bda01g00588 . Bpe02g00450 . . . . . Cma01g01791 . Car01g01397 . . . . . . . . . . . . . . . . . . Cone4ag1610 Cone7ag1342 . . Lsi04g01491 Csa04g02473 . . . . . . . . . . Sed01g2712 Cmo01g01849 . . . . . . . Bhi09g03234 Tan01g4701 Cmetu07g2077 . Hepe01g1824 . . . . . . . . . . . Chy07g00185 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59