Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1611 ATGACCCTTAAAGTCAAGTCAGTATTGAAGTTTTTGACCCGAGACTGGAGTTTTGGAGATCCTTCTGCTAAACGGTTTGGTCCAACAGTCAAGTTTCTTGCGGGCAACGCATTACGAATTGGATTATTGGAAGTACAATATCTAAAAGCCCTCGTGTCGTCGCTTCACTTGCCGAGACTACAAAAGAGCGCCAACCCCGCCGCTTTACGAGCCAACACCGCCACTCTCACTCCGGAATCTGATACAAAGTTTAACAGCAATAGCGAACCAATATTGAAAATGTCGAATCGATATGCACAGGGTAGGCAAGAAGGAAGCAAGAGCTTCACGAAAACTCAGCGGAAATACATGATTGTTGCCTCCGATGAATCACCAAACCCTAATACAACACTCTCCAATTCCCTCAGACAATCCATTTCCAAACAATCTGATGCTGCCACTGCGAATTCCAGTTCCGCAGTATCGACGAGTAGGTTTCAGATGGGCGCGAACGGCGTTTGCGTGTCTAGCAAGGCTCACGATGGCAATTTCGTTAATTACTTGCCTCAAGATGAGGCTGTGGCGTCTGGTCTTCCCGCCTATGAAGGTGGATTGGAGCCGGTGGAGTCTCAGAGAGTGGTGGACCTTCTGAATAGAGAGCTCTCTCGCTTGCTTAAGCTGAGCGCCAAAGAATTCTGGAGAGAAGTTGCTAGAGATACTTCCTTGCATGAATTTCTAGATAGCTTCCTTAAATTCAGGAGCAGATGGTATGATTTCCCTCATCGTAGAGTTAAAGGGATAATTGCAGGGGTCATTGTTGGAGAGTTCGAATTATGCCGCCGTGTTTTCATGGTACTGTATCGAATATCTTCCAATAGGGATCCTCATGCTCGAGCAGCTGATAGCCTCAGCGCAAAGGATCATGAAGTCTTGGATGTAGTGCTTTTGCAGGAAAAAAAGTTGCTCGACCTGCCAAAGCTGTTTGATATATGCGCTATATATGGTCATGAAAATGAGGAATTGACCAGAATTATGGTTGGAAATGCTATGAAATCCCAACCTAACATCCATGACAATTTGACCTCAGTTGTGTCACATTTTCTGACCATCGTCCAAACCATGCATCAAAGATGCAACACATCTCTGGAGGCTCTTCTTTCCACTGGAAGCGATGGAGATGGTAGATTTAATCAACTTCATACCGACTTCTTGGCAGTAATTGACTTTATAAACGATGCAATTGTGTCCTTGGATGCTTTTGTATCTACATACAATCCAGCAGCTATCTTCTTCTTATGTCCTGTTGATACAAGCTTTGGAAATGAAGACCTGTCTGGCACTCTTGCAAGATTGCATGATTCATTGCTTCCATCTTTACAACGGGGATTTAGAATTCTTCTAGAGTCCAGGAAGGATGAAATGATATCCGATATTGCTATGAGTTTAAAGATGTTATCAAGTAGAATGATCAAATTTGCCAGTGTAGAGGATCCTCTAATAAGAGCAGATATTTTGGTTCAAACTTTGAGAGAGATCAACGGAGCTTCACAACAAGTTCAGGAGAACCACCCCAGCACAACGTTTATTCAAAAAGTTGAAAAGGATTTCCATATAATGGATAAAATTGAAACCTTACGAAGTTCTGGATGGATACATATGGATGAAGACCATTTTGGGTATATATCTGGGATACTGATGTATTCTCCAAAAGCAACTATGAAAGTGCCTTCTTCTGTGGCTGCCCCTGGGACGAGAAACAAAGTACAAATGGATGATGATGCCGTATTTATGCAGTCAAAAATCAGCCAGATAAAGGACCTCTTCCCTGATTATGGCAATGGATATCTAGCTGCCTGCCTAGAAGCATATAATCAGAATCCAGAAGAAGTGATTCAGCGGATTCTTGAAGGGACTCTTCGTGCAGATCTCCAGTCCTTGGAAAAGGATAAAGGAAAAGGGAAATTGGTAGAATCTTCAACCATTGCTGCCTCTACAAACTCAGTCCCCATAAGTAGAGAGCAACAGACAAAAATCCAGATAGTTTCATCATCATCATCTTCATCTTCTTCTTCTACCATAGTAAAAAGCCAGATAGTTCCATCATCTTCGGCTTCTTCTTCCACCATAGGAAGGTATACTAGGAAGTCCAAGGATGAGACATCTGACACAGATATCCTAAACGAGAAAAACAAATCACATTTGGAGAGAACTGCTGCTTTACTTTCTCAGTACGACTATGAAGATGAGTATGATGACTCGTTCGATGATCTTGGTCTGAGTATTGCAGAGACAGTTGGGGAGGAAAATGAAATCTTGGGTGACAGACTTGGTTCAAAATCAGGAAATTCATGGGCTTTGGATACTCGGGCCCAAAATAATCCTAGCACTAGTTCGAAATGGGGTTCTAGGAAGCAGCCCCAATTCTATGTCAAGGATGGTAAGAATTATAGCTACAAAGTTGCAGGTTCAGTTGCTGTTGCAAATTATAATGAAGCGTCATTAGTATCCCAAGCTCAAGAAGAACTGATTCACGGCCTTGGAAAAGGAGGTAACTTTCCTCTTGGTGCTGTTAAGAAGTTGACCGAGCAGTACAAGGAGCAGGATGATCAGTCTGCTGTTTCAGAGGTAGGAGAGAGAGTTCCTACCGGATTTAGGGGTAGAGGAAAGAGGCAAGGAGGAATACAGAGAAACTCATTAGAGAGGCAAGATAAGCAGTTGGATGTTTCCGAGGTAGGTGGTAGAGGAAATGTGGATAGTTTTTGGACTAGGGGAAGAGGGGATGGAAGAAGATCAATGGAAGCTCACGAGGGGCAGGATAAGCAATCTGATGTTTCTGAAATGGAAAGTGGAGGGAATGCTGGGAATTATAGGGGAAGGGGAAGGAGGGGAGGGGGGAGAAACAACAATTGCAGGAAGGATCGGGCCATGAACAAGCATTTTTCTGGTTTAACTGGTCATTAG 2940 43.23 MTLKVKSVLKFLTRDWSFGDPSAKRFGPTVKFLAGNALRIGLLEVQYLKALVSSLHLPRLQKSANPAALRANTATLTPESDTKFNSNSEPILKMSNRYAQGRQEGSKSFTKTQRKYMIVASDESPNPNTTLSNSLRQSISKQSDAATANSSSAVSTSRFQMGANGVCVSSKAHDGNFVNYLPQDEAVASGLPAYEGGLEPVESQRVVDLLNRELSRLLKLSAKEFWREVARDTSLHEFLDSFLKFRSRWYDFPHRRVKGIIAGVIVGEFELCRRVFMVLYRISSNRDPHARAADSLSAKDHEVLDVVLLQEKKLLDLPKLFDICAIYGHENEELTRIMVGNAMKSQPNIHDNLTSVVSHFLTIVQTMHQRCNTSLEALLSTGSDGDGRFNQLHTDFLAVIDFINDAIVSLDAFVSTYNPAAIFFLCPVDTSFGNEDLSGTLARLHDSLLPSLQRGFRILLESRKDEMISDIAMSLKMLSSRMIKFASVEDPLIRADILVQTLREINGASQQVQENHPSTTFIQKVEKDFHIMDKIETLRSSGWIHMDEDHFGYISGILMYSPKATMKVPSSVAAPGTRNKVQMDDDAVFMQSKISQIKDLFPDYGNGYLAACLEAYNQNPEEVIQRILEGTLRADLQSLEKDKGKGKLVESSTIAASTNSVPISREQQTKIQIVSSSSSSSSSSTIVKSQIVPSSSASSSTIGRYTRKSKDETSDTDILNEKNKSHLERTAALLSQYDYEDEYDDSFDDLGLSIAETVGEENEILGDRLGSKSGNSWALDTRAQNNPSTSSKWGSRKQPQFYVKDGKNYSYKVAGSVAVANYNEASLVSQAQEELIHGLGKGGNFPLGAVKKLTEQYKEQDDQSAVSEVGERVPTGFRGRGKRQGGIQRNSLERQDKQLDVSEVGGRGNVDSFWTRGRGDGRRSMEAHEGQDKQSDVSEMESGGNAGNYRGRGRRGGGRNNNCRKDRAMNKHFSGLTGH 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12249015 12253231 + Conep04aG0166300.1 Cone4ag1611 436589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1611 979 ProSiteProfiles CUE domain profile. 589 632 IPR003892 GO:0043130(InterPro)
Cone4ag1611 979 MobiDBLite consensus disorder prediction 774 797 - -
Cone4ag1611 979 Pfam CUE domain 590 631 IPR003892 GO:0043130(InterPro)
Cone4ag1611 979 CDD CUE_ASCC2 591 630 IPR041800 -
Cone4ag1611 979 Gene3D - 588 632 - -
Cone4ag1611 979 MobiDBLite consensus disorder prediction 696 721 - -
Cone4ag1611 979 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 87 486 IPR052586 GO:0043130(PANTHER)
Cone4ag1611 979 SUPERFAMILY UBA-like 589 642 IPR009060 GO:0005515(InterPro)
Cone4ag1611 979 MobiDBLite consensus disorder prediction 916 936 - -
Cone4ag1611 979 MobiDBLite consensus disorder prediction 874 979 - -
Cone4ag1611 979 MobiDBLite consensus disorder prediction 767 797 - -
Cone4ag1611 979 MobiDBLite consensus disorder prediction 705 721 - -
Cone4ag1611 979 MobiDBLite consensus disorder prediction 72 147 - -
Cone4ag1611 979 MobiDBLite consensus disorder prediction 887 901 - -
Cone4ag1611 979 SMART cue_7 589 631 IPR003892 GO:0043130(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1611 K18667 - - mdm:103441046 902.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1611 Cone-Chr4:12249015 Cone7ag1341 Cone-Chr7:9755622 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g657 . Blo12g00984 . Bda03g00185 . Bpe04g00160 . . . . Cma01g01790 Cma09g00286 . . . Cpe06g00196 . . . . . . . . . . . . . . . Cone4ag1611 Cone7ag1341 . . . Csa04g02474 . . . . . . . . . . . Cmo01g01848 Cmo09g00277 . . . Car09g00240 . Cpe02g00217 Bhi09g03233 Tan01g4699 . . . Mch11g0359 . Cla05g02103 Cam05g2255 Cec05g2275 Cco05g2316 Clacu05g2251 Cmu05g2114 Cre05g2238 . . Chy07g00186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59