Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1612 | ATGGAAAGCTATTTGAAAGAAAATTTCGGGGAGGTGAAAGCGAAGAACTCATCGGAGGAAGCGCTTCAGAGATGGAGGAAGCTATGTTGGGTGGTGAAGAATCCGAAACGGAGGTTTCGTTTCACAGCTAATCTCTCCAAGCGTTTTGAGGCCGACGCTATACGGCGATCCAATAAGGAGAAATTAAAAGTTGCAGTCCTTGTTTCCCAAGCTGCTCTACAATTTATCAATGGCCTGAGTTTGTCAAGTGACTACACCGTGCCTAAAGAGGTAGAAACTGCAGGTTTTCAAATTTGTGCTGATGAAGTCAGTTCCATTGTTGATGGTCGTGATCCGAAAAAGCTCAGGATTCATGGTTGGGTAGGTGGCATTGCAGACAAGCTTTCTACATCAATTACCACTGGAATTCCTACTTCTGAGAATTTGATCAAAACCAGAAAAGAGATTTATGGCATCAACAAATTCACTGAAACCCCACCCCGTGGTTTTTGGCTTTTTGTTTGGGAAGCCCTACAAGATATGACTCTAATGATACTTGGTGCTTGTGCCATTGTGTCTCTTCTAGTCGGCATAACTATTGAAGGATGGCCCAAAGGAGCCCATGATGGACTTGGAATTGTTGCGAGCATTTTGCTTGTGGTATTTGTCACTGCCACGAGTGACTATAGACAGTCTCTTCAGTTCAAGGATTTGGACAGAGAGAAGAAAAAGATCGCAATCCAGGTTACCAGAAATGGGTTCAGACAAAAGCTTTCGATATATGATCTACTTCCTGGCGACATTGTTCATCTTTCCATAGGGGATCAAGTACCAGCTGATGGTCTTTTTGTTTCAGGCTTTTCTGTTTTGATTAACGAATCAAGTTTAACCGGTGAAAGTGAACCGATTAATGTGAATGACGAAAATCCTTTTCTCCTCTCTGGAACAAAAGTTCAGGATGGATCATGCAAGATGCTTGTGACTTCTGTTGGAATGAGAACCCAATGGGGCAAACTGATGGCTACTCTCAGTGAAGGAGGAGATGATGAGACTCCCTTGCAGGTGAAGCTAAATGGCGTGGCAACCATTATCGGTAAAATAGGACTGTTTTTTGCTGTTGTCACATTTGCCGTTTTGGTGCAAGGATTGTTTAGCCGCAAGCTCCAAGAAAGGTCGCACTGGATTTGGTCTGGAGATGATGCAATGGCCATTCTAGAGTTCTTTGCTATTGCTGTTACCATTGTTGTTGTTGCCGTTCCTGAAGGATTGCCATTGGCGGTGACCCTTAGCCTTGCTTTTGCCATGAAAAAGATGATGAATGATAAGGCCCTTGTCAGGCATCTGGCTGCTTGTGAGACAATGGGATCTGCTACTACTATCTGTAGTGACAAGACTGGGACACTAACTACTAACTGTATGACAGTTGTGAAAGCTTGTATGTGCGGGAAAGTGAAAGAAGTTGGAAGCTCTACTGAGAGTACTAATTATGGCTCTGAAATTCCTAATTCCTCTCTAAGGATTCTACTTCAGTCAATATTCAATAATACTGGAGGAGATATTGTCAAAAATGAAGATGGTAAGATTGAAATTCTTGGAACACCTACTGAATCTGCTCTTTTGCAATTTGGGCTGTCACTTGGAGGAAATTTCCAAGAAGTACGTGAAGCATGTAAAATTGTAAGAGTTGAGCCCTTCAATTCTTTGAAGAAACGAATGGGAGTAGTTCTAGAGCTTCCGGAACGTGGTTTCCGTGCCCACTCTAAAGGTGCTTCTGAAATAGTGTTAGCTTCATGCAACAAAGTGTTAGACTCCAATGGTGATGTTGTTCCCCTCAATGAAGAGTCCATCAATCGGTTGAATAATACAATCGAACAATTTGCCAATGAAGCTCTTAGAACTCTGTGCCTTGCTTACATGGACATTGAAGGTGAGTACAATGCAGAGAGTTCTATGCCTGTAAACGGGTACACATGCATAGGAATCGTTGGTATCAAAGATCCAGTGCGTCCAGGTGTCAAGGAATCTGTTGCAATTTGTAGAGCAGCTGGTATCACTGTAAGGATGGTTACTGGAGACAACATAAATACTGCAAAGGCAATTGCTAGAGAATGTGGGATTTTGACTGATGGTGTAGCAATTGAAGGCCCAGTATTTCGTGAGATGAATGAGGAAGAAATGCTCAAGATAATTCCAAAAATTCAGGTAATGGCACGATCTTCTCCAATGGATAAGCATACTCTTGTGAAACAATTACGCACCAGTCTGCAAGAAGTTGTTGCAGTGACTGGTGATGGCACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGACTAGCAATGGGCATTGCTGGAACTGAGGTGGCAAAGGAGAGTGCTGATGTGATAATTCTAGATGACAATTTCTCCACAATTGCAACTGTGGCCAAATGGGGACGGTCAGTTTATATAAACATTCAGAAATTCGTCCAGTTTCAGCTGACAGTAAATGTAGTTGCATTACTTGTCAACTTTTCTTCAGCCTGTTTAACCGGACATGCTCCTCTCACTGCCGTTCAGCTTCTCTGGGTCAACATGATAATGGACACACTAGGAGCACTTGCATTAGCCACAGAGCCTCCTACTGACGACTTGATGAAGAGATCTCCAGTTGGTAGGAGAGGAAATTTCATCAATAATGTGATGTGGAGAAATATCTTAGGACAATCTCTATATCAATTTGTGATTATCTGGTATCTCCAGACCAGAGGAAAAGCACTTTTCCATCTCGATGGTCCAGAGTCAGATTTGACACTGAACACAATAATATTCAACTCTTTCGTCTTCTGTCAGGTATTCAACGAGGTCAGCTCTAGAGAGATGGAGAAGATAAATGTGTTTAAAGGAATTCTAGATAACTATGTCTTTGCGTCTGTGCTGAGTTGCACAGTCCTGTTCCAAATCATCATAGTTCAATTTCTGGGTGAATTTGCAAACACACATCCTCTCAGTTTGCCTCAATGGATTTTCACTCTTCTCCTTGGCTTCCTTGGCATGCCCATTGCCGCAGCTTTGAAGATGATCCCGGTTGGATCAGACTGA | 3060 | 42.58 | MESYLKENFGEVKAKNSSEEALQRWRKLCWVVKNPKRRFRFTANLSKRFEADAIRRSNKEKLKVAVLVSQAALQFINGLSLSSDYTVPKEVETAGFQICADEVSSIVDGRDPKKLRIHGWVGGIADKLSTSITTGIPTSENLIKTRKEIYGINKFTETPPRGFWLFVWEALQDMTLMILGACAIVSLLVGITIEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAIQVTRNGFRQKLSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLINESSLTGESEPINVNDENPFLLSGTKVQDGSCKMLVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLFSRKLQERSHWIWSGDDAMAILEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNCMTVVKACMCGKVKEVGSSTESTNYGSEIPNSSLRILLQSIFNNTGGDIVKNEDGKIEILGTPTESALLQFGLSLGGNFQEVREACKIVRVEPFNSLKKRMGVVLELPERGFRAHSKGASEIVLASCNKVLDSNGDVVPLNEESINRLNNTIEQFANEALRTLCLAYMDIEGEYNAESSMPVNGYTCIGIVGIKDPVRPGVKESVAICRAAGITVRMVTGDNINTAKAIARECGILTDGVAIEGPVFREMNEEEMLKIIPKIQVMARSSPMDKHTLVKQLRTSLQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGHAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRSPVGRRGNFINNVMWRNILGQSLYQFVIIWYLQTRGKALFHLDGPESDLTLNTIIFNSFVFCQVFNEVSSREMEKINVFKGILDNYVFASVLSCTVLFQIIIVQFLGEFANTHPLSLPQWIFTLLLGFLGMPIAAALKMIPVGSD | 1019 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 12258704 | 12263415 | - | Conep04aG0166400.1 | Cone4ag1612 | 436590 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1612 | 1019 | PANTHER | CATION TRANSPORTING ATPASE | 83 | 1016 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cone4ag1612 | 1019 | SUPERFAMILY | Calcium ATPase, transduction domain A | 240 | 334 | IPR008250 | - | |
| Cone4ag1612 | 1019 | Pfam | haloacid dehalogenase-like hydrolase | 633 | 769 | - | - | |
| Cone4ag1612 | 1019 | Pfam | Cation transport ATPase (P-type) | 515 | 594 | - | - | |
| Cone4ag1612 | 1019 | FunFam | Calcium-transporting ATPase | 772 | 1018 | - | - | |
| Cone4ag1612 | 1019 | NCBIfam | HAD-IC family P-type ATPase | 546 | 701 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag1612 | 1019 | NCBIfam | HAD-IC family P-type ATPase | 720 | 837 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag1612 | 1019 | NCBIfam | HAD-IC family P-type ATPase | 392 | 483 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag1612 | 1019 | Gene3D | - | 464 | 660 | IPR023299 | GO:0000166(InterPro) | |
| Cone4ag1612 | 1019 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 50 | IPR024750 | GO:0005516(InterPro) | |
| Cone4ag1612 | 1019 | FunFam | Calcium-transporting ATPase | 217 | 337 | - | - | |
| Cone4ag1612 | 1019 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 456 | 462 | IPR018303 | - | |
| Cone4ag1612 | 1019 | FunFam | Calcium-transporting ATPase | 464 | 660 | - | - | |
| Cone4ag1612 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 454 | 468 | - | - | |
| Cone4ag1612 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 779 | 791 | - | - | |
| Cone4ag1612 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 755 | 774 | - | - | |
| Cone4ag1612 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 675 | 685 | - | - | |
| Cone4ag1612 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 653 | 664 | - | - | |
| Cone4ag1612 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 285 | 299 | - | - | |
| Cone4ag1612 | 1019 | Gene3D | - | 169 | 1014 | - | - | |
| Cone4ag1612 | 1019 | Gene3D | - | 451 | 800 | IPR023214 | - | |
| Cone4ag1612 | 1019 | SMART | Cation_ATPase_N_a_2 | 116 | 191 | IPR004014 | - | |
| Cone4ag1612 | 1019 | Gene3D | - | 17 | 77 | - | - | |
| Cone4ag1612 | 1019 | PRINTS | H+-transporting ATPase (proton pump) signature | 612 | 630 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag1612 | 1019 | PRINTS | H+-transporting ATPase (proton pump) signature | 787 | 812 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag1612 | 1019 | PRINTS | H+-transporting ATPase (proton pump) signature | 755 | 771 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone4ag1612 | 1019 | SUPERFAMILY | HAD-like | 452 | 860 | IPR036412 | - | |
| Cone4ag1612 | 1019 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 104 | 1016 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cone4ag1612 | 1019 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 460 | 665 | IPR023299 | GO:0000166(InterPro) | |
| Cone4ag1612 | 1019 | CDD | P-type_ATPase_Ca_PMCA-like | 146 | 888 | - | - | |
| Cone4ag1612 | 1019 | SFLD | C1.7: P-type atpase like | 436 | 807 | - | - | |
| Cone4ag1612 | 1019 | Gene3D | - | 140 | 337 | - | - | |
| Cone4ag1612 | 1019 | Pfam | Cation transporter/ATPase, N-terminus | 122 | 186 | IPR004014 | - | |
| Cone4ag1612 | 1019 | Pfam | Cation transporting ATPase, C-terminus | 840 | 1014 | IPR006068 | - | |
| Cone4ag1612 | 1019 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| Cone4ag1612 | 1019 | SFLD | p-type atpase | 436 | 807 | IPR044492 | - | |
| Cone4ag1612 | 1019 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 121 | 1015 | IPR023298 | - | |
| Cone4ag1612 | 1019 | FunFam | Calcium-transporting ATPase | 649 | 800 | - | - | |
| Cone4ag1612 | 1019 | Pfam | E1-E2 ATPase | 239 | 433 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0799 | Cone-Chr1:53921952 | Cone4ag1612 | Cone-Chr4:12258704 | 5.94E-53 | dispersed | |
| Cone1ag0801 | Cone-Chr1:53923959 | Cone4ag1612 | Cone-Chr4:12258704 | 7.37E-84 | dispersed | |
| Cone4ag0278 | Cone-Chr4:1262302 | Cone4ag1612 | Cone-Chr4:12258704 | 4.01E-261 | dispersed | |
| Cone4ag1612 | Cone-Chr4:12258704 | Cone6ag1463 | Cone-Chr6:11673578 | 0 | dispersed | |
| Cone4ag1612 | Cone-Chr4:12258704 | Cone7ag1339 | Cone-Chr7:9747578 | 0 | wgd | |
| Cone4ag1612 | Cone-Chr4:12258704 | Cone9ag1384 | Cone-Chr9:10346429 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1612 | K01537 | - | csv:101221694 | 1692.94 |