Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1612 ATGGAAAGCTATTTGAAAGAAAATTTCGGGGAGGTGAAAGCGAAGAACTCATCGGAGGAAGCGCTTCAGAGATGGAGGAAGCTATGTTGGGTGGTGAAGAATCCGAAACGGAGGTTTCGTTTCACAGCTAATCTCTCCAAGCGTTTTGAGGCCGACGCTATACGGCGATCCAATAAGGAGAAATTAAAAGTTGCAGTCCTTGTTTCCCAAGCTGCTCTACAATTTATCAATGGCCTGAGTTTGTCAAGTGACTACACCGTGCCTAAAGAGGTAGAAACTGCAGGTTTTCAAATTTGTGCTGATGAAGTCAGTTCCATTGTTGATGGTCGTGATCCGAAAAAGCTCAGGATTCATGGTTGGGTAGGTGGCATTGCAGACAAGCTTTCTACATCAATTACCACTGGAATTCCTACTTCTGAGAATTTGATCAAAACCAGAAAAGAGATTTATGGCATCAACAAATTCACTGAAACCCCACCCCGTGGTTTTTGGCTTTTTGTTTGGGAAGCCCTACAAGATATGACTCTAATGATACTTGGTGCTTGTGCCATTGTGTCTCTTCTAGTCGGCATAACTATTGAAGGATGGCCCAAAGGAGCCCATGATGGACTTGGAATTGTTGCGAGCATTTTGCTTGTGGTATTTGTCACTGCCACGAGTGACTATAGACAGTCTCTTCAGTTCAAGGATTTGGACAGAGAGAAGAAAAAGATCGCAATCCAGGTTACCAGAAATGGGTTCAGACAAAAGCTTTCGATATATGATCTACTTCCTGGCGACATTGTTCATCTTTCCATAGGGGATCAAGTACCAGCTGATGGTCTTTTTGTTTCAGGCTTTTCTGTTTTGATTAACGAATCAAGTTTAACCGGTGAAAGTGAACCGATTAATGTGAATGACGAAAATCCTTTTCTCCTCTCTGGAACAAAAGTTCAGGATGGATCATGCAAGATGCTTGTGACTTCTGTTGGAATGAGAACCCAATGGGGCAAACTGATGGCTACTCTCAGTGAAGGAGGAGATGATGAGACTCCCTTGCAGGTGAAGCTAAATGGCGTGGCAACCATTATCGGTAAAATAGGACTGTTTTTTGCTGTTGTCACATTTGCCGTTTTGGTGCAAGGATTGTTTAGCCGCAAGCTCCAAGAAAGGTCGCACTGGATTTGGTCTGGAGATGATGCAATGGCCATTCTAGAGTTCTTTGCTATTGCTGTTACCATTGTTGTTGTTGCCGTTCCTGAAGGATTGCCATTGGCGGTGACCCTTAGCCTTGCTTTTGCCATGAAAAAGATGATGAATGATAAGGCCCTTGTCAGGCATCTGGCTGCTTGTGAGACAATGGGATCTGCTACTACTATCTGTAGTGACAAGACTGGGACACTAACTACTAACTGTATGACAGTTGTGAAAGCTTGTATGTGCGGGAAAGTGAAAGAAGTTGGAAGCTCTACTGAGAGTACTAATTATGGCTCTGAAATTCCTAATTCCTCTCTAAGGATTCTACTTCAGTCAATATTCAATAATACTGGAGGAGATATTGTCAAAAATGAAGATGGTAAGATTGAAATTCTTGGAACACCTACTGAATCTGCTCTTTTGCAATTTGGGCTGTCACTTGGAGGAAATTTCCAAGAAGTACGTGAAGCATGTAAAATTGTAAGAGTTGAGCCCTTCAATTCTTTGAAGAAACGAATGGGAGTAGTTCTAGAGCTTCCGGAACGTGGTTTCCGTGCCCACTCTAAAGGTGCTTCTGAAATAGTGTTAGCTTCATGCAACAAAGTGTTAGACTCCAATGGTGATGTTGTTCCCCTCAATGAAGAGTCCATCAATCGGTTGAATAATACAATCGAACAATTTGCCAATGAAGCTCTTAGAACTCTGTGCCTTGCTTACATGGACATTGAAGGTGAGTACAATGCAGAGAGTTCTATGCCTGTAAACGGGTACACATGCATAGGAATCGTTGGTATCAAAGATCCAGTGCGTCCAGGTGTCAAGGAATCTGTTGCAATTTGTAGAGCAGCTGGTATCACTGTAAGGATGGTTACTGGAGACAACATAAATACTGCAAAGGCAATTGCTAGAGAATGTGGGATTTTGACTGATGGTGTAGCAATTGAAGGCCCAGTATTTCGTGAGATGAATGAGGAAGAAATGCTCAAGATAATTCCAAAAATTCAGGTAATGGCACGATCTTCTCCAATGGATAAGCATACTCTTGTGAAACAATTACGCACCAGTCTGCAAGAAGTTGTTGCAGTGACTGGTGATGGCACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGACTAGCAATGGGCATTGCTGGAACTGAGGTGGCAAAGGAGAGTGCTGATGTGATAATTCTAGATGACAATTTCTCCACAATTGCAACTGTGGCCAAATGGGGACGGTCAGTTTATATAAACATTCAGAAATTCGTCCAGTTTCAGCTGACAGTAAATGTAGTTGCATTACTTGTCAACTTTTCTTCAGCCTGTTTAACCGGACATGCTCCTCTCACTGCCGTTCAGCTTCTCTGGGTCAACATGATAATGGACACACTAGGAGCACTTGCATTAGCCACAGAGCCTCCTACTGACGACTTGATGAAGAGATCTCCAGTTGGTAGGAGAGGAAATTTCATCAATAATGTGATGTGGAGAAATATCTTAGGACAATCTCTATATCAATTTGTGATTATCTGGTATCTCCAGACCAGAGGAAAAGCACTTTTCCATCTCGATGGTCCAGAGTCAGATTTGACACTGAACACAATAATATTCAACTCTTTCGTCTTCTGTCAGGTATTCAACGAGGTCAGCTCTAGAGAGATGGAGAAGATAAATGTGTTTAAAGGAATTCTAGATAACTATGTCTTTGCGTCTGTGCTGAGTTGCACAGTCCTGTTCCAAATCATCATAGTTCAATTTCTGGGTGAATTTGCAAACACACATCCTCTCAGTTTGCCTCAATGGATTTTCACTCTTCTCCTTGGCTTCCTTGGCATGCCCATTGCCGCAGCTTTGAAGATGATCCCGGTTGGATCAGACTGA 3060 42.58 MESYLKENFGEVKAKNSSEEALQRWRKLCWVVKNPKRRFRFTANLSKRFEADAIRRSNKEKLKVAVLVSQAALQFINGLSLSSDYTVPKEVETAGFQICADEVSSIVDGRDPKKLRIHGWVGGIADKLSTSITTGIPTSENLIKTRKEIYGINKFTETPPRGFWLFVWEALQDMTLMILGACAIVSLLVGITIEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAIQVTRNGFRQKLSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLINESSLTGESEPINVNDENPFLLSGTKVQDGSCKMLVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLFSRKLQERSHWIWSGDDAMAILEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNCMTVVKACMCGKVKEVGSSTESTNYGSEIPNSSLRILLQSIFNNTGGDIVKNEDGKIEILGTPTESALLQFGLSLGGNFQEVREACKIVRVEPFNSLKKRMGVVLELPERGFRAHSKGASEIVLASCNKVLDSNGDVVPLNEESINRLNNTIEQFANEALRTLCLAYMDIEGEYNAESSMPVNGYTCIGIVGIKDPVRPGVKESVAICRAAGITVRMVTGDNINTAKAIARECGILTDGVAIEGPVFREMNEEEMLKIIPKIQVMARSSPMDKHTLVKQLRTSLQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGHAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRSPVGRRGNFINNVMWRNILGQSLYQFVIIWYLQTRGKALFHLDGPESDLTLNTIIFNSFVFCQVFNEVSSREMEKINVFKGILDNYVFASVLSCTVLFQIIIVQFLGEFANTHPLSLPQWIFTLLLGFLGMPIAAALKMIPVGSD 1019
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 12258704 12263415 - Conep04aG0166400.1 Cone4ag1612 436590
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1612 1019 PANTHER CATION TRANSPORTING ATPASE 83 1016 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cone4ag1612 1019 SUPERFAMILY Calcium ATPase, transduction domain A 240 334 IPR008250 -
Cone4ag1612 1019 Pfam haloacid dehalogenase-like hydrolase 633 769 - -
Cone4ag1612 1019 Pfam Cation transport ATPase (P-type) 515 594 - -
Cone4ag1612 1019 FunFam Calcium-transporting ATPase 772 1018 - -
Cone4ag1612 1019 NCBIfam HAD-IC family P-type ATPase 546 701 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone4ag1612 1019 NCBIfam HAD-IC family P-type ATPase 720 837 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone4ag1612 1019 NCBIfam HAD-IC family P-type ATPase 392 483 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone4ag1612 1019 Gene3D - 464 660 IPR023299 GO:0000166(InterPro)
Cone4ag1612 1019 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516(InterPro)
Cone4ag1612 1019 FunFam Calcium-transporting ATPase 217 337 - -
Cone4ag1612 1019 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Cone4ag1612 1019 FunFam Calcium-transporting ATPase 464 660 - -
Cone4ag1612 1019 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Cone4ag1612 1019 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Cone4ag1612 1019 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Cone4ag1612 1019 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Cone4ag1612 1019 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Cone4ag1612 1019 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Cone4ag1612 1019 Gene3D - 169 1014 - -
Cone4ag1612 1019 Gene3D - 451 800 IPR023214 -
Cone4ag1612 1019 SMART Cation_ATPase_N_a_2 116 191 IPR004014 -
Cone4ag1612 1019 Gene3D - 17 77 - -
Cone4ag1612 1019 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone4ag1612 1019 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone4ag1612 1019 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone4ag1612 1019 SUPERFAMILY HAD-like 452 860 IPR036412 -
Cone4ag1612 1019 NCBIfam calcium-translocating P-type ATPase, PMCA-type 104 1016 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Cone4ag1612 1019 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166(InterPro)
Cone4ag1612 1019 CDD P-type_ATPase_Ca_PMCA-like 146 888 - -
Cone4ag1612 1019 SFLD C1.7: P-type atpase like 436 807 - -
Cone4ag1612 1019 Gene3D - 140 337 - -
Cone4ag1612 1019 Pfam Cation transporter/ATPase, N-terminus 122 186 IPR004014 -
Cone4ag1612 1019 Pfam Cation transporting ATPase, C-terminus 840 1014 IPR006068 -
Cone4ag1612 1019 FunFam Calcium-transporting ATPase 17 77 - -
Cone4ag1612 1019 SFLD p-type atpase 436 807 IPR044492 -
Cone4ag1612 1019 SUPERFAMILY Calcium ATPase, transmembrane domain M 121 1015 IPR023298 -
Cone4ag1612 1019 FunFam Calcium-transporting ATPase 649 800 - -
Cone4ag1612 1019 Pfam E1-E2 ATPase 239 433 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0799 Cone-Chr1:53921952 Cone4ag1612 Cone-Chr4:12258704 5.94E-53 dispersed
Cone1ag0801 Cone-Chr1:53923959 Cone4ag1612 Cone-Chr4:12258704 7.37E-84 dispersed
Cone4ag0278 Cone-Chr4:1262302 Cone4ag1612 Cone-Chr4:12258704 4.01E-261 dispersed
Cone4ag1612 Cone-Chr4:12258704 Cone6ag1463 Cone-Chr6:11673578 0 dispersed
Cone4ag1612 Cone-Chr4:12258704 Cone7ag1339 Cone-Chr7:9747578 0 wgd
Cone4ag1612 Cone-Chr4:12258704 Cone9ag1384 Cone-Chr9:10346429 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1612 K01537 - csv:101221694 1692.94