Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1615 ATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTCGAAGAGCCACCACAATCGCCTGAGTCACTTGCAACTAGAGATTTCTCGGCAAGTGGCCTTTCTTCTTCTAGGACTGGAGAATGGGATTCAAAATTCGAGGATGCCCAAGTGGATGAAGTTGAATCCACTCTCAAAGAAGCCCTCTCCTTAAATTATGAGGAAGCTAGAGCTTTGTTGGGGAGACTTGAATATCAGAGAGGAAATTTTGATGCTGCCCTTCAAGTATTTCAGGGTATTGACATTAAAACTTTAACCCCAAGGATTATTAAGGCTATTTCGGAGAGAACAAAGCAGAGAAAACCTCGTTCCAAAGGTGATGTCCTGCCAGCTGGCTTGATGTCTATGCATTCAGTTAGTCTTCTTCTTGAAGCAATATTACTCAAGGCAAAATCACTAGAGGAGCTCGGGAAATACATAGAGGCTGCAAAGGAGTGCAAAATAATTCTGGATACAGTTGAATCAGCTCTACCTAATGGAATGCTTGATTCCATTGGAGAAGACTGCAAGTTGCTCGAAATGTTTCACAGAGCATTGGAGTTGCTACCCAATTTATGGACTAAAGCAGGCTTTCTTGATCATGCTATCACTGCTTATCGCAAAGCTCTTGTTAAGCCATGGAATCTAGACTCTGAGAGAGTAGCCACTGTACAGAAAGAATTGGCTACAATGTTACTCTATGGTGGGGTTGAAACTGTCTTACCTGATGAGTTAAAAGTATGGGGCCCATCTACCCCTACAAATAATACAGAGGAAGCAATCTTGCTACTTCTTATACTCATGAGGAAAGTGGTAATGGGGGAGGTAAATTGGGATTCAGAAATTATGGATCATTTGACCTATGCACTATCTATTACCGGACAGTTTGAATTATTAGCAGAGCACATAGAGCAGGTATTTCCAGGTATATATACAAGAACTGAGAGGTGGTACTTTCTTGCCCTTTGTTACAGTTCTGCTGGACAGAAGGAAACTGCTTTAAACCTTTTGAAGAAAGTCTGTGGTTGTTCTGAGTCGGACAAGAAACTACATCTTCCTTCTTTCTTGTTCGGAGCAAAACTGTACTCCCAGGATATGTCGTGTGCCCATGAGGGGATCAATTTTGTTCGGAAAATGATCAATTTGGGGAATCATAGAAGCAAGCATTTTATGTCTCAAGCGCATAAGTTTCTTGGTATCTGCTATGGTAATGCGGCTAGAGTTTCTGTATCTGATACTGAAAGGGTTCTATTTCAGGGAGATTCTTTGCACTATTTAAGCTTGGCTGTGAATGATGGGGATGACCCAGAAGCAATATTTTACCTTGGTTTGGAAAATGCTTTGCAAAGAAATCTAGATGCTGCTTTGAATAATGTGATGTTATACCTGGAAATGGTGGGTGGAAGTTATGGAAGAGTATATAAGCTATTAGCATTGATACTTTCTGCCAAGAAGCAGTTCGATAATGCAGAATCCATAGTTAATTTTGCTTTGGATGAGGGTGAGAAGCTGGATCAGTTGGAGTTTCTTAGATTGAAAGCTGCACTTCAAATTGCTCAGAAACAGCCCAAACAAGCAATAGAAACCTATAGAATCTTGCTTGCTTTAATTCAAGCTCAAAAGGATCTTCAGCATCAATCTGAAGACATTGAACAAGCAAAAGATTCCAATTCTGAGATATTATCCGATAGAACTCTAGAAGTTTCAGCCTGGCAGGATTTATCCACAATTTATTCAAAGCTCGGTTTATGGCCTGATTCCGAAATATGTCTGGAGCGAGCCAAGTCGATCCACTTGTATTCTCCACGAAGTTGGCATGAAACAGGTACGTTATTTGAAGCTCGATCATTATACACGGAAGCCCTTGTTTCATTCTCTGTTGCACTGTCAATGGACCCTGATTATGTTCCGAGCGTTGTTTCAACAGCTGAAGTACTGATAAAATTAGGGGGCCTCACTCTTCCTATTGCTCGTAGCTTTTTAATGATTGCCATAAGATTAGAACCCACAAACCACAAGGCATGGTTTAATCTTGGGATGCTTGCCAAAAAGGAAGGTTTATTACCACAAGCAGTGGAATTTTTTCAAGCTGCATATGAACTCGAGTCTTCATCTCCCGTCCTAGGCTTTGTATGA 2148 41.01 MLCACSGEQFKFEEPPQSPESLATRDFSASGLSSSRTGEWDSKFEDAQVDEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKTLTPRIIKAISERTKQRKPRSKGDVLPAGLMSMHSVSLLLEAILLKAKSLEELGKYIEAAKECKIILDTVESALPNGMLDSIGEDCKLLEMFHRALELLPNLWTKAGFLDHAITAYRKALVKPWNLDSERVATVQKELATMLLYGGVETVLPDELKVWGPSTPTNNTEEAILLLLILMRKVVMGEVNWDSEIMDHLTYALSITGQFELLAEHIEQVFPGIYTRTERWYFLALCYSSAGQKETALNLLKKVCGCSESDKKLHLPSFLFGAKLYSQDMSCAHEGINFVRKMINLGNHRSKHFMSQAHKFLGICYGNAARVSVSDTERVLFQGDSLHYLSLAVNDGDDPEAIFYLGLENALQRNLDAALNNVMLYLEMVGGSYGRVYKLLALILSAKKQFDNAESIVNFALDEGEKLDQLEFLRLKAALQIAQKQPKQAIETYRILLALIQAQKDLQHQSEDIEQAKDSNSEILSDRTLEVSAWQDLSTIYSKLGLWPDSEICLERAKSIHLYSPRSWHETGTLFEARSLYTEALVSFSVALSMDPDYVPSVVSTAEVLIKLGGLTLPIARSFLMIAIRLEPTNHKAWFNLGMLAKKEGLLPQAVEFFQAAYELESSSPVLGFV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12274792 12277640 + Conep04aG0166700.1 Cone4ag1615 436593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1615 715 SUPERFAMILY TPR-like 549 709 IPR011990 GO:0005515(InterPro)
Cone4ag1615 715 Gene3D Tetratricopeptide repeat domain 256 542 IPR011990 GO:0005515(InterPro)
Cone4ag1615 715 Pfam Tetratricopeptide repeat 55 90 - -
Cone4ag1615 715 Coils Coil 540 560 - -
Cone4ag1615 715 Gene3D Tetratricopeptide repeat domain 41 240 IPR011990 GO:0005515(InterPro)
Cone4ag1615 715 Gene3D Tetratricopeptide repeat domain 543 712 IPR011990 GO:0005515(InterPro)
Cone4ag1615 715 Pfam Tetratricopeptide repeat 677 707 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 SUPERFAMILY HCP-like 320 540 - -
Cone4ag1615 715 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Cone4ag1615 715 MobiDBLite consensus disorder prediction 6 40 - -
Cone4ag1615 715 SUPERFAMILY TPR-like 48 343 IPR011990 GO:0005515(InterPro)
Cone4ag1615 715 Coils Coil 57 77 - -
Cone4ag1615 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 SMART tpr_5 572 605 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 SMART tpr_5 475 508 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 SMART tpr_5 134 167 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 SMART tpr_5 511 544 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 SMART tpr_5 606 639 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 SMART tpr_5 676 709 IPR019734 GO:0005515(InterPro)
Cone4ag1615 715 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1615 Cone-Chr4:12274792 Cone6ag0261 Cone-Chr6:1199416 2.69E-171 dispersed
Cone7ag1334 Cone-Chr7:9734705 Cone4ag1615 Cone-Chr4:12274792 5.52E-107 transposed
Cone7ag1335 Cone-Chr7:9735316 Cone4ag1615 Cone-Chr4:12274792 2.59E-156 transposed
Cone4ag1615 Cone-Chr4:12274792 Cone7ag1333 Cone-Chr7:9733989 6.50E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1615 K21843 - mdm:103455892 996.497