Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1617 ATGGGGATCCGACCATTTGAGTTGTTGCCTCCAACGGAAACTCTAGAAATAGAGAATGGACTCAAGCTCGTTCCACGAGTGAAGCTCAATGTCACAGTCTATCCCTCAAGCCCGTCAGTGACCAAACCGCTCGATGAATGGAAACTGAAGCGTGCTCTGATAGACTTTCTCGATGCCTCCCTCACCGTCTCTGTCACCGTACCAGAAGAGGACATCGTGATCAAGCGGCTCAAGGACTTAAAGAAGCGAAAGCGCGAAGGTCCACTCGCGCATGGCGCCATCTTCGTTCGCGACCTAGGGTTTGTAAAGAACAGCGGAAGAAGAACTGAACCGGACGAAGAAGACGTGAAGGTCTTGGAGAATAAGTTCTTGGATCGGAGAAAGTATCTGGTTGATAAGCTGGATGGAATCGAACTAAATCTCGAAGGTTCTAAGTTCAAGCTCACTGTTTCTTTGCCGGAATGCGACAACTTTGACGGGATGAAGAATGCTTGGGAGGAGTATTACGTCTTCGGAAATCGAGGATATTCCAGGACTGGGCGAAGAGAACCTGATACTATCATCTTGAGTGGCGTTCCATCACGTTGGTTTTCTGAACCGCGGGTTTCATCTAAGCCCTCAATGTTGGTTACCCATACCATCTTCTCCACCTTTGGAAAAATAAGGAATCTTAATATTGCCGTGGACGATGGATTAGGCAAGGATGAAGATTCCGATGGAACGGAAATCATTTCAAGTCTGCATTGTAAAATCATTGTTCAGTTTGAACAATACAGGGACTTCTATAATGCTTTGAAAGTGTTATCCGGTCGCTCATTTCAGAAGGAGGGTTTCAGATTGTGGGCAGATTATGAAGTTACATGGGATAAGGACGGGTTTTTCCGGTACTCAAGTAATCAAACACAGGAAAAAGGATATACAGTGCAGAAAATTGAAGAAGGAGAATACATAAGTGAAGCTTCCAGAAATCATCAAAATTCTCGAGCCAGTCCTGATGATGTACGTAGAAGAAGATTCAAGGAATAG 1026 45.03 MGIRPFELLPPTETLEIENGLKLVPRVKLNVTVYPSSPSVTKPLDEWKLKRALIDFLDASLTVSVTVPEEDIVIKRLKDLKKRKREGPLAHGAIFVRDLGFVKNSGRRTEPDEEDVKVLENKFLDRRKYLVDKLDGIELNLEGSKFKLTVSLPECDNFDGMKNAWEEYYVFGNRGYSRTGRREPDTIILSGVPSRWFSEPRVSSKPSMLVTHTIFSTFGKIRNLNIAVDDGLGKDEDSDGTEIISSLHCKIIVQFEQYRDFYNALKVLSGRSFQKEGFRLWADYEVTWDKDGFFRYSSNQTQEKGYTVQKIEEGEYISEASRNHQNSRASPDDVRRRRFKE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12280360 12282633 + Conep04aG0166900.1 Cone4ag1617 436595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1617 341 MobiDBLite consensus disorder prediction 318 341 - -
Cone4ag1617 341 MobiDBLite consensus disorder prediction 326 341 - -
Cone4ag1617 341 PANTHER B-LYMPHOCYTE ANTIGEN-RELATED 12 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1617 K13169 - - csv:101209693 456.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1617 Cone-Chr4:12280360 Cone7ag1331 Cone-Chr7:9731075 5.68E-203 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g645 . . . . . . . . . . . . . . Sed10g1171 . . Bhi04g00434 Tan02g1725 Cmetu03g0164 . . . . . . . . . . . Cone4ag1617 Cone7ag1331 . . . . . Cme03g02107 . . . Bda01g01624 . . . . . . . . Cma05g00135 Car05g00116 . Cpe11g00116 . . . . . . . . . . . . . . . . Csa02g01889 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012528 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29