Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1625 ATGCCGATGTACTACCAGCCCTCTAAATCCAACAAGCTGGGTGTGGGCGACGGAGGGCAGGTTTTAGATGTAGAAACCGCTGTAAAAGATGGTATTCTGGGCGGCGGATTCTCTGCATTCTGCGGCGTTGCTGCCGCTGAGAAATTAGATCTGAAGGAAATGATCGAAGAACTTGACTCTATTGACGTTCCGTCGGTGTTTATCTGCCCAATCTCGCTAGGCCCAATGAGAGACCCTGTTACCCTCTGCACCGGCCAAACTTATGATCGATCCAACATCCTTAAATGGTTCTCTTTAGGCCATTTCACTTGCCCCACTACAATGCAAGAACTATGGGACGATTCTATCATACCTAACAAAACCCTACAGCAGCTGATTCACACTTGGTTTTCTCAGAAGTACTTGGCGATGAAGAAGCGGTCCGAGGATGTTCACGGAAGGGTTTTAGAGCTTTTGGACTCTCTAAAGAAAGTTAAAGGTCAAGCTAGAGTCCAAGCTCTGAAAGAGCTTAGGAAGGTTGTCTCAGCCCATTCTTCCGCGAAGAGAACTGCCGCTGAAGGTGGTGTTGTTGCTTTGATTTGTTCTCTGCTCGGTCCCTTCACTTCCCATGCTGTTGGGTCGGAAGCAATTGGGATTTTGGTTAATTTGGATCTCGAGTTGGAGTCGAAGAAGATCCTTATCCAACCTGCTAAGATATCCCTCATGGTTGATATGTTGAATGAAGGATCTATAGAGACAAAGATCAATTGCACGAAATTGATCAACGTTTTGATTGAAGGAGAGGAGTCTGGGGCGGAAAATATGTCAAGCTTGAGTCTTTTGGTTGGATTGTTGAGATTAATTAAAGATAAAAGATACCCAAATGGAGTCCTAGCAGGACTAACATTGCTCAAGACAATTTCTTCAACCGAATCGAGTCATAATTCAATTGTCAGCATCGGGGCAATTCCACACTTAATTGAACTATTGCCGAATTTGGACTGTGAATGCTTGGAATTAGCACTTCATGTTCTAGAAGTAGTATCATCCTTGCCAGAAGGAAGTTTGGGTTTGAAAGATTGTTCTAATTCGATACCCACATTGGTGAAATTGTTGATGAGAGTCTCGGAAAATTGTACTCAGCTTGCTCTGTCCATTTTGTGGGCAGTTTGTAAACTTGCTCCTGAAGAATGTGCTCCCGTTGCGGTAGAGGCTGGATTAGCCGCAAAACTCTTGCTTGTGATTCAAAGTGGGTGCAATCCGGTTTTGAAGCAGAAATCAGCTGAGCTTTTGAAATTGTGTAGCCAGAATTACACGGCTAATAACTTCATTTCCAAGTGTAAGCTTACAAGAACGATGCAATAA 1344 43.9 MPMYYQPSKSNKLGVGDGGQVLDVETAVKDGILGGGFSAFCGVAAAEKLDLKEMIEELDSIDVPSVFICPISLGPMRDPVTLCTGQTYDRSNILKWFSLGHFTCPTTMQELWDDSIIPNKTLQQLIHTWFSQKYLAMKKRSEDVHGRVLELLDSLKKVKGQARVQALKELRKVVSAHSSAKRTAAEGGVVALICSLLGPFTSHAVGSEAIGILVNLDLELESKKILIQPAKISLMVDMLNEGSIETKINCTKLINVLIEGEESGAENMSSLSLLVGLLRLIKDKRYPNGVLAGLTLLKTISSTESSHNSIVSIGAIPHLIELLPNLDCECLELALHVLEVVSSLPEGSLGLKDCSNSIPTLVKLLMRVSENCTQLALSILWAVCKLAPEECAPVAVEAGLAAKLLLVIQSGCNPVLKQKSAELLKLCSQNYTANNFISKCKLTRTMQ 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12321853 12323887 + Conep04aG0167800.1 Cone4ag1625 436603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1625 447 SMART Ubox_2 66 129 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1625 447 CDD RING-Ubox_PUB 64 114 IPR045210 -
Cone4ag1625 447 PANTHER WDSAM1 PROTEIN 60 442 IPR045185 GO:0061630(InterPro)
Cone4ag1625 447 Pfam U-box domain 63 133 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1625 447 SUPERFAMILY ARM repeat 232 431 IPR016024 -
Cone4ag1625 447 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1625 447 Pfam gag gene protein p17 (matrix protein) 239 284 IPR000071 GO:0005198(InterPro)
Cone4ag1625 447 SUPERFAMILY RING/U-box 57 133 - -
Cone4ag1625 447 Gene3D - 146 440 IPR011989 -
Cone4ag1625 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 145 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1625 Cone-Chr4:12321853 Cone8ag1127 Cone-Chr8:9943296 7.14E-33 dispersed
Cone17ag0896 Cone-Chr17:7048897 Cone4ag1625 Cone-Chr4:12321853 3.08E-203 wgd
Cone20ag0239 Cone-Chr20:1039077 Cone4ag1625 Cone-Chr4:12321853 3.44E-207 wgd
Cone4ag1625 Cone-Chr4:12321853 Cone7ag1324 Cone-Chr7:9687474 1.26E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1625 - - - 0.0