Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1633 ATGAAGCAGATTAATGATAGTAACAATGGCAGAAATGATAACAACGATAATAACAGTAACAGCTTGCTGGGTTTCTCTCTCTCACCTCACATGAAGATGGAGCTTACTTCCCATCATGAAGACGGAGGAGTTCCTTTTCACTCTACTGCACTGTCGAGTACCTTCTGCATTCCACCTTCCTCTTCTTCCTCTCACCTCAACTTCTCCTCACCTTTCTACAATGGCGTAGTGGGACCCAACGCGGCCAGTTTCCTCCACTCTCCTTTATCCTTCATGCCTCTAAACTCAGACGGCTCACTTTCCATAATGGACGCCCTGACTACCTCCTCCCCTATGCCTCCTCAAAACCCGTCTCCTAAGCTTGAAAACTTTCTAGGCGGTTCCATGGCTCTGAGCTTAGACAGCACTCTCTATTTCAATCCAAACGTCGAGTCAGAAAACGACAGCAACAGAGGGGAACATTCTCTGAAGCTTCTCCAACAACCGCAAAGAAATCTTCATCATCATCATCATAATCAACATCATCACCACCCTCTCCAGTATTTTCCGGCGATTTATTACCAACAGCCATTGCAGCAGGAAGAGGAAGGCAAGGAGACCCAGATTCAGAACTGTGAAACAGAGGATGGTTGGGTTACTACGGAGCAGCAGAACATGATGGGTTCTTCTAGCATGGTAGTTGATGACATTGGAGGTGGGTCTGGGTCAATGGGCTGTGAGGATTTACACGCACTTAGTTTATCCATGAGTCCTGGCTCGCAATCTAACTGCGTAACGGTTCCTAGGCAGGTTTATCCTACTGGGTCGGAATGTGTTGTAGCCATGGAAACGAAGAAGAGAGGCCTTCCTAAAGTGGGTCAGAAGCAGACTGTTCATAGAAAGTCCATCGATACGTTTGGCCAGAGAACTTCTCAATACAGAGGAGTTACCAGGCATAGATGGACGGGTAGATATGAGGCTCATCTGTGGGATAATTCTTGCAAGAAAGAAGGACAAACCAGGAAAGGAAGACAAGTGTATCTGGGGGGCTATGATATGGAAGAGAAGGCAGCAAGAGCTTATGATCTTGCCGCTCTCAAGTACTGGGGACCAGCCACGCATATAAACTTTCCGGTTGAAAATTATCGGGCCGAACTTGAGGAAATGGAGAAAATGAATCGGCAGGAATACGTTGCACACTTGAGGAGGAGAAGCAGTGGTTTTTCAAGGGGAGCTTCAATCTACAGAGGAGTAACGAGGCATCATCAGCATGGACGTTGGCAAGCTCGTATCGGTAGGGTTGCTGGCAACAAAGACCTCTATCTAGGAACATTCAGCACCCAAGAGGAAGCAGCAGAAGCATACGACATAGCTGCCATAAAGTTCCGAGGGGCTAATGCAGTCACCAATTTTGACGTGTCCAGATACGACGTTGATAGGATAATCTCGAGCAACACTCTTCTTGCTGGAGAGCTTGCTAGAAGACCTAAACACATGGAACCAAACAACAGCCAGGACATAAGAAATATTAGCGGGAACGGTTCAGATTGGAAGATGGTTTTGCAAAACTCTCCCCAGCAACAACAGCATAATAATTCTTCCCTCAATGTTGAATGTCTAGATCCAAAGTCAACAAGTTCCAGTTTCTATTTAGTCGGGATTGATTCGGTCAGTGCTACTGAACCCTTGATCGACGAACAGGTCACTTATTTATCAAACGCATCGTCGCTCGCAAGTTCGAGAGAAGATAGCCCGGATAAATCGGGCCATTGCCCATCGACCTATGTCTCAAATGCATTAGCATCTTCTTCGACAAGCGGGGTCAGTTCTTGGTTTCCATCAGTCGTAGCACCACTGAGGCCTTCAGGTCCTGCTATTTCTGTTGCTCACTATCCCGTTTTTGCTGCTTGGAATGAATGA 1899 46.71 MKQINDSNNGRNDNNDNNSNSLLGFSLSPHMKMELTSHHEDGGVPFHSTALSSTFCIPPSSSSSHLNFSSPFYNGVVGPNAASFLHSPLSFMPLNSDGSLSIMDALTTSSPMPPQNPSPKLENFLGGSMALSLDSTLYFNPNVESENDSNRGEHSLKLLQQPQRNLHHHHHNQHHHHPLQYFPAIYYQQPLQQEEEGKETQIQNCETEDGWVTTEQQNMMGSSSMVVDDIGGGSGSMGCEDLHALSLSMSPGSQSNCVTVPRQVYPTGSECVVAMETKKRGLPKVGQKQTVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPATHINFPVENYRAELEEMEKMNRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDVSRYDVDRIISSNTLLAGELARRPKHMEPNNSQDIRNISGNGSDWKMVLQNSPQQQQHNNSSLNVECLDPKSTSSSFYLVGIDSVSATEPLIDEQVTYLSNASSLASSREDSPDKSGHCPSTYVSNALASSSTSGVSSWFPSVVAPLRPSGPAISVAHYPVFAAWNE 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12351513 12354520 + Conep04aG0168600.1 Cone4ag1633 436611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1633 632 FunFam AP2-like ethylene-responsive transcription factor ANT 304 373 - -
Cone4ag1633 632 SUPERFAMILY DNA-binding domain 304 373 IPR016177 GO:0003677(InterPro)
Cone4ag1633 632 Pfam AP2 domain 408 457 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 Pfam AP2 domain 305 363 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 SUPERFAMILY DNA-binding domain 406 467 IPR016177 GO:0003677(InterPro)
Cone4ag1633 632 Coils Coil 372 392 - -
Cone4ag1633 632 SMART rav1_2 407 471 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 SMART rav1_2 305 377 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 ProSiteProfiles AP2/ERF domain profile. 407 465 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 CDD AP2 406 467 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 Gene3D AP2/ERF domain 407 467 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 Gene3D AP2/ERF domain 304 373 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 PRINTS Ethylene responsive element binding protein signature 447 467 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 196 535 - -
Cone4ag1633 632 ProSiteProfiles AP2/ERF domain profile. 305 371 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 CDD AP2 304 372 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone4ag1633 632 MobiDBLite consensus disorder prediction 1 25 - -
Cone4ag1633 632 FunFam AP2-like ethylene-responsive transcription factor 406 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0433 Cone-Chr1:3903900 Cone4ag1633 Cone-Chr4:12351513 1.33E-74 dispersed
Cone4ag1633 Cone-Chr4:12351513 Cone6ag1474 Cone-Chr6:11740377 2.24E-138 dispersed
Cone20ag0244 Cone-Chr20:1080995 Cone4ag1633 Cone-Chr4:12351513 6.78E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46036 PF01163 RIO1 2.00E-51 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1633 K09285 - vvi:100252316 625.935