Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1633 | ATGAAGCAGATTAATGATAGTAACAATGGCAGAAATGATAACAACGATAATAACAGTAACAGCTTGCTGGGTTTCTCTCTCTCACCTCACATGAAGATGGAGCTTACTTCCCATCATGAAGACGGAGGAGTTCCTTTTCACTCTACTGCACTGTCGAGTACCTTCTGCATTCCACCTTCCTCTTCTTCCTCTCACCTCAACTTCTCCTCACCTTTCTACAATGGCGTAGTGGGACCCAACGCGGCCAGTTTCCTCCACTCTCCTTTATCCTTCATGCCTCTAAACTCAGACGGCTCACTTTCCATAATGGACGCCCTGACTACCTCCTCCCCTATGCCTCCTCAAAACCCGTCTCCTAAGCTTGAAAACTTTCTAGGCGGTTCCATGGCTCTGAGCTTAGACAGCACTCTCTATTTCAATCCAAACGTCGAGTCAGAAAACGACAGCAACAGAGGGGAACATTCTCTGAAGCTTCTCCAACAACCGCAAAGAAATCTTCATCATCATCATCATAATCAACATCATCACCACCCTCTCCAGTATTTTCCGGCGATTTATTACCAACAGCCATTGCAGCAGGAAGAGGAAGGCAAGGAGACCCAGATTCAGAACTGTGAAACAGAGGATGGTTGGGTTACTACGGAGCAGCAGAACATGATGGGTTCTTCTAGCATGGTAGTTGATGACATTGGAGGTGGGTCTGGGTCAATGGGCTGTGAGGATTTACACGCACTTAGTTTATCCATGAGTCCTGGCTCGCAATCTAACTGCGTAACGGTTCCTAGGCAGGTTTATCCTACTGGGTCGGAATGTGTTGTAGCCATGGAAACGAAGAAGAGAGGCCTTCCTAAAGTGGGTCAGAAGCAGACTGTTCATAGAAAGTCCATCGATACGTTTGGCCAGAGAACTTCTCAATACAGAGGAGTTACCAGGCATAGATGGACGGGTAGATATGAGGCTCATCTGTGGGATAATTCTTGCAAGAAAGAAGGACAAACCAGGAAAGGAAGACAAGTGTATCTGGGGGGCTATGATATGGAAGAGAAGGCAGCAAGAGCTTATGATCTTGCCGCTCTCAAGTACTGGGGACCAGCCACGCATATAAACTTTCCGGTTGAAAATTATCGGGCCGAACTTGAGGAAATGGAGAAAATGAATCGGCAGGAATACGTTGCACACTTGAGGAGGAGAAGCAGTGGTTTTTCAAGGGGAGCTTCAATCTACAGAGGAGTAACGAGGCATCATCAGCATGGACGTTGGCAAGCTCGTATCGGTAGGGTTGCTGGCAACAAAGACCTCTATCTAGGAACATTCAGCACCCAAGAGGAAGCAGCAGAAGCATACGACATAGCTGCCATAAAGTTCCGAGGGGCTAATGCAGTCACCAATTTTGACGTGTCCAGATACGACGTTGATAGGATAATCTCGAGCAACACTCTTCTTGCTGGAGAGCTTGCTAGAAGACCTAAACACATGGAACCAAACAACAGCCAGGACATAAGAAATATTAGCGGGAACGGTTCAGATTGGAAGATGGTTTTGCAAAACTCTCCCCAGCAACAACAGCATAATAATTCTTCCCTCAATGTTGAATGTCTAGATCCAAAGTCAACAAGTTCCAGTTTCTATTTAGTCGGGATTGATTCGGTCAGTGCTACTGAACCCTTGATCGACGAACAGGTCACTTATTTATCAAACGCATCGTCGCTCGCAAGTTCGAGAGAAGATAGCCCGGATAAATCGGGCCATTGCCCATCGACCTATGTCTCAAATGCATTAGCATCTTCTTCGACAAGCGGGGTCAGTTCTTGGTTTCCATCAGTCGTAGCACCACTGAGGCCTTCAGGTCCTGCTATTTCTGTTGCTCACTATCCCGTTTTTGCTGCTTGGAATGAATGA | 1899 | 46.71 | MKQINDSNNGRNDNNDNNSNSLLGFSLSPHMKMELTSHHEDGGVPFHSTALSSTFCIPPSSSSSHLNFSSPFYNGVVGPNAASFLHSPLSFMPLNSDGSLSIMDALTTSSPMPPQNPSPKLENFLGGSMALSLDSTLYFNPNVESENDSNRGEHSLKLLQQPQRNLHHHHHNQHHHHPLQYFPAIYYQQPLQQEEEGKETQIQNCETEDGWVTTEQQNMMGSSSMVVDDIGGGSGSMGCEDLHALSLSMSPGSQSNCVTVPRQVYPTGSECVVAMETKKRGLPKVGQKQTVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPATHINFPVENYRAELEEMEKMNRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDVSRYDVDRIISSNTLLAGELARRPKHMEPNNSQDIRNISGNGSDWKMVLQNSPQQQQHNNSSLNVECLDPKSTSSSFYLVGIDSVSATEPLIDEQVTYLSNASSLASSREDSPDKSGHCPSTYVSNALASSSTSGVSSWFPSVVAPLRPSGPAISVAHYPVFAAWNE | 632 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12351513 | 12354520 | + | Conep04aG0168600.1 | Cone4ag1633 | 436611 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1633 | 632 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 304 | 373 | - | - | |
Cone4ag1633 | 632 | SUPERFAMILY | DNA-binding domain | 304 | 373 | IPR016177 | GO:0003677(InterPro) | |
Cone4ag1633 | 632 | Pfam | AP2 domain | 408 | 457 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | Pfam | AP2 domain | 305 | 363 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | SUPERFAMILY | DNA-binding domain | 406 | 467 | IPR016177 | GO:0003677(InterPro) | |
Cone4ag1633 | 632 | Coils | Coil | 372 | 392 | - | - | |
Cone4ag1633 | 632 | SMART | rav1_2 | 407 | 471 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | SMART | rav1_2 | 305 | 377 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | ProSiteProfiles | AP2/ERF domain profile. | 407 | 465 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | CDD | AP2 | 406 | 467 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | Gene3D | AP2/ERF domain | 407 | 467 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | Gene3D | AP2/ERF domain | 304 | 373 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | PRINTS | Ethylene responsive element binding protein signature | 447 | 467 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | PRINTS | Ethylene responsive element binding protein signature | 306 | 317 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 196 | 535 | - | - | |
Cone4ag1633 | 632 | ProSiteProfiles | AP2/ERF domain profile. | 305 | 371 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | CDD | AP2 | 304 | 372 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone4ag1633 | 632 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cone4ag1633 | 632 | FunFam | AP2-like ethylene-responsive transcription factor | 406 | 467 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0433 | Cone-Chr1:3903900 | Cone4ag1633 | Cone-Chr4:12351513 | 1.33E-74 | dispersed | |
Cone4ag1633 | Cone-Chr4:12351513 | Cone6ag1474 | Cone-Chr6:11740377 | 2.24E-138 | dispersed | |
Cone20ag0244 | Cone-Chr20:1080995 | Cone4ag1633 | Cone-Chr4:12351513 | 6.78E-126 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46036 | PF01163 | RIO1 | 2.00E-51 | CL0016 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1633 | K09285 | - | vvi:100252316 | 625.935 |