Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1634 ATGGGTAGTCTTGAAAATGGTGAAATCGGTCCTCAAATGTATGGTCTTGAAAAGGTATCGGGAATGGTAATTGGACCGGATACTTTTTTTGCTTCTGGTTGGAACCCATTTGTTTCCATGCCTCAATCTGAAGATTTTGCAACTTACTCACTGCCTACTACTACTTCTACTACTCATTTTGTTCAGAATCCATCTGATTCAAGACATTTGGAGGTGATGGAAAAACTTTCATCCTTTGGAAGAGGAAGCTTCTCAGAAAGGATTGACTCTTTTGCTCTACCTGAATCTAATCACATCACTAATTCAGAAGAGAGAGCTGTAGATGGATCTTCACCAGATCATAATAGAAGAAAACGATCCTCTGACTCTCCATCTGGTTCAAATAAGGTAGAAGAACGGGATGCAAAGAAACCAAAAATTGATAGTAACAATGGCTTGCGAGGTAAGCAAGCGGGTAAATTGGTTGAGGAAAAATCGCACAGTGAAGATCCTTCTGAAAAGAATTACATTCATGTTAGAGCTAGAAGAGGACAAGCCACTAATAGTCATAGCCTTGCAGAGAGGGTGAGGAGAGAAAAGATTAGCGAGCGAATGAGATTGCTTCAAGAGCTTGTTCCGGGATGTAATAAGATTATTGGGAAGGCTGTAATGCTTGATGAGATTATCAATTATGTTCAGTCCTTGCAACAACAAGTTGAGTTTTTGTCAATGAAACTTGCCACTGTGAATCCAGAATTGAACTTTGAAACGCTTCAGATTCCACAAAAAAATATTCTTCATACTAGAAGAAGCAATGGAGCTGTTGTTGGGTCTGGTCCTGGATTGAGTTCTTCTCACTCTCATCCCTTTCCTCTTGGGATTTTCGAGCTGTCCCCAACAATGCCAAGTATTCCGAGTTTATCTCAACATTTTCCCTCTTTAGCTCAGAATGAGTTAGGCAACGTGGTCCAGAGTCTTTTCCAAATGGGATTCAATCCGGGTTCATCGATCGACAATTTGGTAGCAAATGGGCACTTGAAAGATATAGCTATTTCAAGATATGGGCAAAAGGGTCATTCCTTGTCTAACTGA 1071 40.34 MGSLENGEIGPQMYGLEKVSGMVIGPDTFFASGWNPFVSMPQSEDFATYSLPTTTSTTHFVQNPSDSRHLEVMEKLSSFGRGSFSERIDSFALPESNHITNSEERAVDGSSPDHNRRKRSSDSPSGSNKVEERDAKKPKIDSNNGLRGKQAGKLVEEKSHSEDPSEKNYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKIIGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFETLQIPQKNILHTRRSNGAVVGSGPGLSSSHSHPFPLGIFELSPTMPSIPSLSQHFPSLAQNELGNVVQSLFQMGFNPGSSIDNLVANGHLKDIAISRYGQKGHSLSN 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12358324 12360752 + Conep04aG0168700.1 Cone4ag1634 436612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1634 356 Gene3D - 175 250 IPR036638 GO:0046983(InterPro)
Cone4ag1634 356 CDD bHLH_AtBPE_like 168 248 - -
Cone4ag1634 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 247 IPR036638 GO:0046983(InterPro)
Cone4ag1634 356 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 309 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone4ag1634 356 MobiDBLite consensus disorder prediction 151 170 - -
Cone4ag1634 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 228 IPR011598 GO:0046983(InterPro)
Cone4ag1634 356 MobiDBLite consensus disorder prediction 107 143 - -
Cone4ag1634 356 Pfam Helix-loop-helix DNA-binding domain 181 229 IPR011598 GO:0046983(InterPro)
Cone4ag1634 356 SMART finulus 184 234 IPR011598 GO:0046983(InterPro)
Cone4ag1634 356 MobiDBLite consensus disorder prediction 95 170 - -
Cone4ag1634 356 FunFam Basic helix-loop-helix transcription factor 175 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1634 Cone-Chr4:12358324 Cone6ag0499 Cone-Chr6:2493438 2.30E-42 dispersed
Cone17ag0902 Cone-Chr17:7112047 Cone4ag1634 Cone-Chr4:12358324 7.29E-83 wgd
Cone20ag0245 Cone-Chr20:1087174 Cone4ag1634 Cone-Chr4:12358324 7.31E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46037 PF04526 DUF568 4.40E-14 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1634 - - - 0.0