Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1638 ATGTTGTCAAAGAAAGCCAGTCGTGATTGTCATGGCCAAGACTCGCCCTACTTCTTTGGGTGGCAGGAGTACGAGAAAAACCCTTACCATTCTGTTCAAAACCCTACCGGAATCATTCAGATGGGACTCGCAGAAAACGATCTTTCTTTTGATCTTCTGGAGGAATGGCTTGAAAGAAACCCTCATTCTGTAGAGATCACGAAGAGACTAAACGGATCATCATCCGAATCCCTTTTCAGACAACTAGCTCTCTTCCAAGACTACCACGGCTTACCTGCTTTAAAACAAGAGCTTGTAAGCTTGATGGCAGAAATACGAGGAAACCATGTAGAGTTTGATCCAAACAAGCTCGTTCTAACAGCTGGCTCAACTTCTGCCAATGAGATTCTAATATTCTGTTTGGCTGATCCTGGTGAAGCTTTTCTTCTACCCACTCCATACTACCCAGGATTTGATAGGGATCTTAAATGGCGGACTGGAGTTGAAATCGTTCCAATACGCTGCTCAAGCTCAAACGACTTTAGAATCACAGTCTCAGCTCTTGAAGAAGCCCATCAACAAGCCCAAAAGCTCGGGTTGAAAGTCAAAGGAGTGTTAATCACTAACCCCTCAAATCCATTAGGCACCACCATGAGCCAACAAGAACTTAACCACCTCTTAGATTTCGCCATACAAAAACAAATTCATATAATTAGCGATGAAATCTATTCAGGAACAGTATTCTGTTCCCCAGCTGGTTTTATAGGCATTACCAAAGCGCTGGCTGAGAAAAACGTCCAACCAGATCACGCTGCCATCTGGACCCGTGTCCACATCGTTTCCAGCCTGTCTAAAGATCTCGGTCTACCTGGATTCCGCGTAGGCATGATTTATTCCGACAACGAATTTGTGGTCTCGACGGCTAGAAAAATGTCCAGCTTCGGACTCGTTTCTAGTCAAACTCAGAATTTAGTGTTAAACATATTGTCGGACAAGAAATTCATGAGCGAGTACATGAAGGAGAACAAGAAGAGGATTAGGAAGAGGAAGGAGATGCTTGTCTCCGAGCTACGATTACGTGGGATACGGTGCCTGAAGAGCAACGCTGGTCTGTTCTGTTGGGTAGATATGAGGCATCTTCTGAGCTCGAACACATTTGAAGCAGAGAAGGAGCTTTGGGTAAGAATTCTTACTCAGGTTCGGGTCAATATCTCTCCCGGATCGTCCTTTCATTGCTCCGAACCGGGTTGGTTTAGGATGTGCTTTGCGAATATCAGTGAAGAAACATTACGTGTTGCCATGAAGCGTCTTAAGGAATTTATAAACCTTAGTAATAATAGTACTACCACCGGCGCCGCAGTAAAATATTGTTTGAACCACCGTCAGGGACACCGAAGAGCGGCGGCTTGTAACTCAAGGAAGAGGTCACTGGCCACCGGAATATAG 1425 44.91 MLSKKASRDCHGQDSPYFFGWQEYEKNPYHSVQNPTGIIQMGLAENDLSFDLLEEWLERNPHSVEITKRLNGSSSESLFRQLALFQDYHGLPALKQELVSLMAEIRGNHVEFDPNKLVLTAGSTSANEILIFCLADPGEAFLLPTPYYPGFDRDLKWRTGVEIVPIRCSSSNDFRITVSALEEAHQQAQKLGLKVKGVLITNPSNPLGTTMSQQELNHLLDFAIQKQIHIISDEIYSGTVFCSPAGFIGITKALAEKNVQPDHAAIWTRVHIVSSLSKDLGLPGFRVGMIYSDNEFVVSTARKMSSFGLVSSQTQNLVLNILSDKKFMSEYMKENKKRIRKRKEMLVSELRLRGIRCLKSNAGLFCWVDMRHLLSSNTFEAEKELWVRILTQVRVNISPGSSFHCSEPGWFRMCFANISEETLRVAMKRLKEFINLSNNSTTTGAAVKYCLNHRQGHRRAAACNSRKRSLATGI 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12377793 12379474 + Conep04aG0169100.1 Cone4ag1638 436616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1638 474 Gene3D - 61 324 IPR015421 -
Cone4ag1638 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 269 293 - -
Cone4ag1638 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 192 216 - -
Cone4ag1638 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 301 324 - -
Cone4ag1638 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 41 67 - -
Cone4ag1638 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 116 136 - -
Cone4ag1638 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 159 - -
Cone4ag1638 474 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 228 251 - -
Cone4ag1638 474 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 275 288 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Cone4ag1638 474 FunFam 1-aminocyclopropane-1-carboxylate synthase 2 298 429 - -
Cone4ag1638 474 Gene3D Aspartate Aminotransferase, domain 1 27 429 IPR015422 -
Cone4ag1638 474 Pfam Aminotransferase class I and II 39 430 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cone4ag1638 474 SUPERFAMILY PLP-dependent transferases 1 434 IPR015424 -
Cone4ag1638 474 CDD AAT_like 39 432 - -
Cone4ag1638 474 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 4 441 IPR050478 GO:0006520(PANTHER)|GO:0008483(PANTHER)|GO:0016847(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1638 K01762 - - mdm:103443111 625.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1638 Cone-Chr4:12377793 Cone9ag0808 Cone-Chr9:3883100 1.68E-163 dispersed
Cone12ag0186 Cone-Chr12:929371 Cone4ag1638 Cone-Chr4:12377793 4.64E-214 wgd
Cone17ag0907 Cone-Chr17:7148697 Cone4ag1638 Cone-Chr4:12377793 7.73E-218 wgd
Cone20ag0251 Cone-Chr20:1112947 Cone4ag1638 Cone-Chr4:12377793 8.78E-215 wgd
Cone4ag1638 Cone-Chr4:12377793 Cone7ag1313 Cone-Chr7:9627095 2.37E-53 wgd
Cone4ag1638 Cone-Chr4:12377793 Cone8ag0179 Cone-Chr8:926432 2.10E-216 wgd
Cone4ag1638 Cone-Chr4:12377793 Cone9ag1404 Cone-Chr9:10435022 9.51E-210 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104