Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1641 ATGGGTTCTGGTAAAGGCCAAGATGATAATCACGACGACAACAATATGCCCGGCCTTGTTCTCGGGCTAGGCTATGGCGATAAGCCAACCGTGATGTCCGATCATCGTCATCAAGAAGATCGAATTTTGAAAAAGAAATTGTCATTGAAATTTGACAATGTTTTCCCATCTCTTGCTCTAGGACTTGTTTCAGATGATCAGATCTATCCATCTGTAGGTTATACTTGCAAGATTGAAGTTGATCGTCAGCATCATATGTGCCCCTTACCAGCATCGTCTGCTAGTGCAGCTACGTCGTTTTCTAACTCATCTAGTATCAAGAGGGACAGAGATAAGGTAGACGTGGAAGCTGAGGCTGAGATGGCAGATGTGGATTTGGAGAAACTTTCTTCGAGGGTATGCGACGATCATGATCGTGATCAGGAAGATGATCAATATGATCACGATCAGGCTAGTCCTAGAAAGAAACTGAGACTCACTAAAGAACAATCTTCTGTTCTTGAAGATAGCTTCAAGGACCACACCACTCTCAATCCTAAGCAAAAGCAAGAATTGGCCAAACGGCTAAACCTAAGGCCAAGGCAAGTGGAAGTGTGGTTCCAAAACAGGAGAGCCAGAACAAAGCTGAAGCAAACAGAGATGGAGTGCGAGTTACGGAAAAAATGTTGTGAAAAACTAGCAGAAGAGAACAAGAGGTTAATGAAAGAGATTCAAGTGCTTAAATCAATGAAATCAGTGGCTCCAGTCGCGCCATTCTATATGCATCTACAAGCCGCAGCCACCCTCACCATGTGCCCCTCTTGCGATCATCGTCGTCATGCGCCGTCTCCTATTACTAGACCTAAGCCTCAACTAATTTCAAACCCCTTTAACCACCCATCTGCAGCTTGGTAG 894 44.52 MGSGKGQDDNHDDNNMPGLVLGLGYGDKPTVMSDHRHQEDRILKKKLSLKFDNVFPSLALGLVSDDQIYPSVGYTCKIEVDRQHHMCPLPASSASAATSFSNSSSIKRDRDKVDVEAEAEMADVDLEKLSSRVCDDHDRDQEDDQYDHDQASPRKKLRLTKEQSSVLEDSFKDHTTLNPKQKQELAKRLNLRPRQVEVWFQNRRARTKLKQTEMECELRKKCCEKLAEENKRLMKEIQVLKSMKSVAPVAPFYMHLQAAATLTMCPSCDHRRHAPSPITRPKPQLISNPFNHPSAAW 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12388560 12389632 + Conep04aG0169400.1 Cone4ag1641 436619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1641 297 MobiDBLite consensus disorder prediction 273 297 - -
Cone4ag1641 297 Coils Coil 223 243 - -
Cone4ag1641 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 66 272 IPR050762 -
Cone4ag1641 297 MobiDBLite consensus disorder prediction 281 297 - -
Cone4ag1641 297 Gene3D - 158 208 - -
Cone4ag1641 297 MobiDBLite consensus disorder prediction 92 112 - -
Cone4ag1641 297 ProSitePatterns 'Homeobox' domain signature. 185 208 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone4ag1641 297 CDD homeodomain 153 211 IPR001356 GO:0003677(InterPro)
Cone4ag1641 297 ProSiteProfiles 'Homeobox' domain profile. 150 210 IPR001356 GO:0003677(InterPro)
Cone4ag1641 297 Pfam Homeodomain 154 208 IPR001356 GO:0003677(InterPro)
Cone4ag1641 297 SMART HOX_1 152 214 IPR001356 GO:0003677(InterPro)
Cone4ag1641 297 SUPERFAMILY Homeodomain-like 143 211 IPR009057 -
Cone4ag1641 297 MobiDBLite consensus disorder prediction 130 185 - -
Cone4ag1641 297 FunFam Homeobox-leucine zipper protein 18 137 215 - -
Cone4ag1641 297 SMART halz 210 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1641 Cone-Chr4:12388560 Cone6ag1484 Cone-Chr6:11792840 1.82E-49 dispersed
Cone12ag0188 Cone-Chr12:964039 Cone4ag1641 Cone-Chr4:12388560 2.81E-47 wgd
Cone4ag1641 Cone-Chr4:12388560 Cone7ag1311 Cone-Chr7:9619411 2.62E-128 wgd
Cone4ag1641 Cone-Chr4:12388560 Cone8ag0182 Cone-Chr8:956996 3.29E-44 wgd
Cone4ag1641 Cone-Chr4:12388560 Cone9ag1406 Cone-Chr9:10475756 2.11E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46038 PF00198 2-oxoacid_dh 9.60E-65 CL0149 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1641 K09338 - rcu:8265230 233.417