Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1642 ATGGAAGAATATAATCAACTTGGCGAGAACACAGCTCCTAGGGGGAATTTCTTGTATGCTTCTCCTCTTCTTGCACCGAACTCTTCATCTGGTAATTATGGACGATCTAGTAGAGGTGGGTCAAACGAGGGTAATAATCAGACGGCCCAGATGACAATCAACACTTTCCATCCTCTTCATTCAGGGGGTAGTGATTGTTTTGATCATCATCAACACCCAATTGTCAAGACAGAAGGCAGCACTTCAGTACAGCACCAACAACATCATGTTCATCACAATTTGAACTATTCTCTAATGAGATCAGCTGGATCCAACGGCCCAAACGCTCCGATTCAGCTCCGACAAGCTAGTTTGGATGAACCTTGTAATAATAATAATAACAATAGTAATAGTAGTAATGATGTCGAGGGTATTAAGGCAAAGATCATCGCTCATCCTCAGTATTCCAACCTCTTAGAAGCTTACATGGACTGTAAGAAGGTGGGAGCTCCGCCAGAAGTGGTTGCTCGTCTAGCAGCAGCGCGGCAAGAATTTGAAGCCCGGCAGCGTTCCACACTGGCATCCAGAGATGGTTTCAATAAGGACCCAGAACTAGATCAGTTCATGGAAGCTTATTACGACATGCTGGTGAAATATCGAGAGGAGCTAACAAGGCCTATACAAGAAGCTATGGATTTTATGCGTCGGATTGAGTCTCAGCTTAGCACACTTTGCACTGGACCAGTTCGGATCTTCAACTCTGATGATAAGATGGAAGGTATCGGATCATCCGAGGAGGATCAGGAAAACAGCGGTGGCGAAACTGAACCGCCAGTGATTGATCCGGGTGCAGAGGACCGAGAATTGAAGAACCACCTATTGAGAAAATATAGTGGTTACCTAAGTAGTCTCAAGCAAGAGCTTTCCAAAAAGAAGAAGAAAGGTAAACTACCAAAAGATGCAAGGCAGAAGCTACTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCTGAAACGGAAAAGGTGGCATTGGCTGAATCAACCGGATTAGACCAGAAACAGATAAACAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCTTCTGAAGACATGCAGTTTATGGTGATGGATGGGCTTCACCCTCCCGCAGCCGCTCTTTATATGGACGGTCACTTTATTGGCGACGGTCACTATCGTTTAGGACCGTGA 1200 44.92 MEEYNQLGENTAPRGNFLYASPLLAPNSSSGNYGRSSRGGSNEGNNQTAQMTINTFHPLHSGGSDCFDHHQHPIVKTEGSTSVQHQQHHVHHNLNYSLMRSAGSNGPNAPIQLRQASLDEPCNNNNNNSNSSNDVEGIKAKIIAHPQYSNLLEAYMDCKKVGAPPEVVARLAAARQEFEARQRSTLASRDGFNKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSTLCTGPVRIFNSDDKMEGIGSSEEDQENSGGETEPPVIDPGAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPAAALYMDGHFIGDGHYRLGP 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12394528 12397243 - Conep04aG0169500.1 Cone4ag1642 436620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1642 399 ProSiteProfiles 'Homeobox' domain profile. 301 364 IPR001356 GO:0003677(InterPro)
Cone4ag1642 399 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 112 371 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone4ag1642 399 SMART ELK_2 281 302 IPR005539 GO:0003677(InterPro)
Cone4ag1642 399 Pfam Homeobox KN domain 321 360 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone4ag1642 399 Pfam KNOX1 domain 138 179 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag1642 399 MobiDBLite consensus disorder prediction 1 48 - -
Cone4ag1642 399 Pfam ELK domain 281 302 IPR005539 GO:0003677(InterPro)
Cone4ag1642 399 SUPERFAMILY Homeodomain-like 302 378 IPR009057 -
Cone4ag1642 399 CDD homeodomain 313 365 IPR001356 GO:0003677(InterPro)
Cone4ag1642 399 MobiDBLite consensus disorder prediction 22 48 - -
Cone4ag1642 399 SMART KNOX2_2 188 239 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag1642 399 ProSiteProfiles ELK domain profile. 281 301 IPR005539 GO:0003677(InterPro)
Cone4ag1642 399 MobiDBLite consensus disorder prediction 246 277 - -
Cone4ag1642 399 SMART KNOX1_2 136 180 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag1642 399 Pfam KNOX2 domain 194 238 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone4ag1642 399 ProSitePatterns 'Homeobox' domain signature. 339 362 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone4ag1642 399 SMART HOX_1 303 368 IPR001356 GO:0003677(InterPro)
Cone4ag1642 399 FunFam Homeobox protein knotted-1-like 2 306 368 - -
Cone4ag1642 399 Gene3D - 306 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0022 Cone-Chr1:159153 Cone4ag1642 Cone-Chr4:12394528 9.16E-60 dispersed
Cone1ag0023 Cone-Chr1:160943 Cone4ag1642 Cone-Chr4:12394528 4.66E-25 dispersed
Cone3ag1319 Cone-Chr3:32124771 Cone4ag1642 Cone-Chr4:12394528 2.96E-71 dispersed
Cone4ag1642 Cone-Chr4:12394528 Cone5ag1845 Cone-Chr5:12953241 2.30E-92 dispersed
Cone4ag1642 Cone-Chr4:12394528 Cone7ag1308 Cone-Chr7:9610040 4.61E-271 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46039 PF13432 TPR_16 2.90E-09 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1642 - - - 0.0