Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1644 | ATGATGATCGGAGAAAAAACCCGTTTCATCCCGAGCATTGAAATCCCTCCATGGGACCCACACGACGATTCCAGAAAAGGATCGCCACTCTCCATCACTAGTCCCTCCGTCAACCGTAACGGAAATTCCGGAAACGGCGACCCTAACCTAGACTATATCAGGATGATGCACCGTTATCTTCCGTCGAATGAGTTTGCCGGCGTGGAGTCTGACCCGCCGGATACCGAGGAATTCGACATGGCTGTGGATGCTTTTTCATGCGATCATTTCCGCATGTTCGAGTTCAAGATCAGAAGGTGCACACGTGGGAGGTCACATGACTGGACGGAATGTCCGTACGCTCATCCGGGCGAGAAAGCTCGCCGGAGAGATCCGAGGAAGTACCACTATTCCGGTACGGCGTGTCCGGAGTTTCGCAAAGGGATTTGCAAGAAGGGTGACGCATGTGAGTTCGCTCATGGAATATTCGAGTGCTGGCTCCATCCTGCTCGTTATCGAACACAGCCATGCAAGGACGGACTCGGTTGTCGTAGGCGCGTGTGTTTTTTCGCCCACTCTCCGGAACAACTACGGGTCCTGGCTCAGCAGAGTCCGGGAAGCCTTGGGTCGGGTGATTCATTTGATGGGTCTCCGCCACGTCAGACTCACCGTCATGCAGTCGAGTCTTATCTAGAAAAGATGGCTATGGTCTCATCGCCGCCGCTTTCTCCATCGTCCCCGTCCTTACCGCCAAACAGTTCTGAACACGGTTGCCATCGTGGTTCCATTTACAACTTTACCCCTTCCTGTCGGCTCGTCGCGTTAATGCGCGATCTGCATATCGACAAGACAAAAATGAATCCTCAATGGAACGCTCAGATGGATCCTGGTTATGGGTCGACGATCCGGTCCGGTTTTAACAGCATGCCTTCAACTCCGACCCGAACATCCACTCTATCTGGGCTAGGTGCAGTCGATCACTGGAGCATAGGCGTTGAAGAAGAAGAGGTCGCAATGGAAAGGGTTGAATCTGGGAAATATTTTCGTGACAAGATGTATGCCAAGCTAAGCCGAGATAACTCAGTGAGTCGAGGCGGTGACTCAGCCGTTTCAGCTCCCGACGATGGCTGGGTCTCCGAGCTAGTACAGTGA | 1131 | 52.96 | MMIGEKTRFIPSIEIPPWDPHDDSRKGSPLSITSPSVNRNGNSGNGDPNLDYIRMMHRYLPSNEFAGVESDPPDTEEFDMAVDAFSCDHFRMFEFKIRRCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGICKKGDACEFAHGIFECWLHPARYRTQPCKDGLGCRRRVCFFAHSPEQLRVLAQQSPGSLGSGDSFDGSPPRQTHRHAVESYLEKMAMVSSPPLSPSSPSLPPNSSEHGCHRGSIYNFTPSCRLVALMRDLHIDKTKMNPQWNAQMDPGYGSTIRSGFNSMPSTPTRTSTLSGLGAVDHWSIGVEEEEVAMERVESGKYFRDKMYAKLSRDNSVSRGGDSAVSAPDDGWVSELVQ | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12410916 | 12412470 | + | Conep04aG0169700.1 | Cone4ag1644 | 436622 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1644 | 376 | ProSiteProfiles | Zinc finger C3H1-type profile. | 130 | 156 | IPR000571 | GO:0046872(InterPro) | |
Cone4ag1644 | 376 | MobiDBLite | consensus disorder prediction | 351 | 376 | - | - | |
Cone4ag1644 | 376 | FunFam | Zinc finger CCCH domain-containing protein 66 | 87 | 155 | - | - | |
Cone4ag1644 | 376 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 133 | 154 | IPR000571 | GO:0046872(InterPro) | |
Cone4ag1644 | 376 | MobiDBLite | consensus disorder prediction | 230 | 249 | - | - | |
Cone4ag1644 | 376 | PANTHER | UNKEMPT FAMILY MEMBER | 42 | 376 | IPR045234 | - | |
Cone4ag1644 | 376 | MobiDBLite | consensus disorder prediction | 27 | 47 | - | - | |
Cone4ag1644 | 376 | SMART | c3hfinal6 | 129 | 155 | IPR000571 | GO:0046872(InterPro) | |
Cone4ag1644 | 376 | SMART | c3hfinal6 | 164 | 187 | IPR000571 | GO:0046872(InterPro) | |
Cone4ag1644 | 376 | Gene3D | - | 126 | 197 | - | - | |
Cone4ag1644 | 376 | MobiDBLite | consensus disorder prediction | 12 | 48 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag1644 | Cone-Chr4:12410916 | Cone7ag1137 | Cone-Chr7:8577193 | 3.47E-108 | dispersed | |
Cone17ag0910 | Cone-Chr17:7172447 | Cone4ag1644 | Cone-Chr4:12410916 | 5.98E-116 | wgd | |
Cone4ag1644 | Cone-Chr4:12410916 | Cone7ag0724 | Cone-Chr7:4337825 | 4.32E-93 | wgd | |
Cone4ag1644 | Cone-Chr4:12410916 | Cone7ag1305 | Cone-Chr7:9597418 | 2.85E-262 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46040 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1644 | - | - | - | 0.0 |