Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1644 ATGATGATCGGAGAAAAAACCCGTTTCATCCCGAGCATTGAAATCCCTCCATGGGACCCACACGACGATTCCAGAAAAGGATCGCCACTCTCCATCACTAGTCCCTCCGTCAACCGTAACGGAAATTCCGGAAACGGCGACCCTAACCTAGACTATATCAGGATGATGCACCGTTATCTTCCGTCGAATGAGTTTGCCGGCGTGGAGTCTGACCCGCCGGATACCGAGGAATTCGACATGGCTGTGGATGCTTTTTCATGCGATCATTTCCGCATGTTCGAGTTCAAGATCAGAAGGTGCACACGTGGGAGGTCACATGACTGGACGGAATGTCCGTACGCTCATCCGGGCGAGAAAGCTCGCCGGAGAGATCCGAGGAAGTACCACTATTCCGGTACGGCGTGTCCGGAGTTTCGCAAAGGGATTTGCAAGAAGGGTGACGCATGTGAGTTCGCTCATGGAATATTCGAGTGCTGGCTCCATCCTGCTCGTTATCGAACACAGCCATGCAAGGACGGACTCGGTTGTCGTAGGCGCGTGTGTTTTTTCGCCCACTCTCCGGAACAACTACGGGTCCTGGCTCAGCAGAGTCCGGGAAGCCTTGGGTCGGGTGATTCATTTGATGGGTCTCCGCCACGTCAGACTCACCGTCATGCAGTCGAGTCTTATCTAGAAAAGATGGCTATGGTCTCATCGCCGCCGCTTTCTCCATCGTCCCCGTCCTTACCGCCAAACAGTTCTGAACACGGTTGCCATCGTGGTTCCATTTACAACTTTACCCCTTCCTGTCGGCTCGTCGCGTTAATGCGCGATCTGCATATCGACAAGACAAAAATGAATCCTCAATGGAACGCTCAGATGGATCCTGGTTATGGGTCGACGATCCGGTCCGGTTTTAACAGCATGCCTTCAACTCCGACCCGAACATCCACTCTATCTGGGCTAGGTGCAGTCGATCACTGGAGCATAGGCGTTGAAGAAGAAGAGGTCGCAATGGAAAGGGTTGAATCTGGGAAATATTTTCGTGACAAGATGTATGCCAAGCTAAGCCGAGATAACTCAGTGAGTCGAGGCGGTGACTCAGCCGTTTCAGCTCCCGACGATGGCTGGGTCTCCGAGCTAGTACAGTGA 1131 52.96 MMIGEKTRFIPSIEIPPWDPHDDSRKGSPLSITSPSVNRNGNSGNGDPNLDYIRMMHRYLPSNEFAGVESDPPDTEEFDMAVDAFSCDHFRMFEFKIRRCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGICKKGDACEFAHGIFECWLHPARYRTQPCKDGLGCRRRVCFFAHSPEQLRVLAQQSPGSLGSGDSFDGSPPRQTHRHAVESYLEKMAMVSSPPLSPSSPSLPPNSSEHGCHRGSIYNFTPSCRLVALMRDLHIDKTKMNPQWNAQMDPGYGSTIRSGFNSMPSTPTRTSTLSGLGAVDHWSIGVEEEEVAMERVESGKYFRDKMYAKLSRDNSVSRGGDSAVSAPDDGWVSELVQ 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12410916 12412470 + Conep04aG0169700.1 Cone4ag1644 436622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1644 376 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872(InterPro)
Cone4ag1644 376 MobiDBLite consensus disorder prediction 351 376 - -
Cone4ag1644 376 FunFam Zinc finger CCCH domain-containing protein 66 87 155 - -
Cone4ag1644 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 154 IPR000571 GO:0046872(InterPro)
Cone4ag1644 376 MobiDBLite consensus disorder prediction 230 249 - -
Cone4ag1644 376 PANTHER UNKEMPT FAMILY MEMBER 42 376 IPR045234 -
Cone4ag1644 376 MobiDBLite consensus disorder prediction 27 47 - -
Cone4ag1644 376 SMART c3hfinal6 129 155 IPR000571 GO:0046872(InterPro)
Cone4ag1644 376 SMART c3hfinal6 164 187 IPR000571 GO:0046872(InterPro)
Cone4ag1644 376 Gene3D - 126 197 - -
Cone4ag1644 376 MobiDBLite consensus disorder prediction 12 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1644 Cone-Chr4:12410916 Cone7ag1137 Cone-Chr7:8577193 3.47E-108 dispersed
Cone17ag0910 Cone-Chr17:7172447 Cone4ag1644 Cone-Chr4:12410916 5.98E-116 wgd
Cone4ag1644 Cone-Chr4:12410916 Cone7ag0724 Cone-Chr7:4337825 4.32E-93 wgd
Cone4ag1644 Cone-Chr4:12410916 Cone7ag1305 Cone-Chr7:9597418 2.85E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46040 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1644 - - - 0.0