Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1649 ATGAGTCGTTGCGACACCGGCGCCATTCTCCTTATCCTCTTCGCCTTCTCCAGCTTCGCTTCCAGCAGCCGGGACCTCACAGGAGATTTTCTTCGGCTTCCGTCGGATGCTTCGAGATTTTTCCGCAAAGGCCGTGCAGATGACGACGATGAGAGTACTCTAGGGACGAGATGGGCGGTCCTGATCGCTGGCTCCAATGGCTACTGGAACTATAGGCATCAGGCTGATGTTTGTCATGCTTACCAAGTGTTGAGAAAAAATGGTCTGAAAGAAGAGAACATAATTGTATTCATGTATGATGATATTGCTTTCAATGAAGAGAATCCTAGACCTGGTGTCATCATTAACAGCCCGAATGGTGAAGATGTCTACAAAGGAGTCCCAAAGGATTATACCGGGGAAGATGTTACAGTTAACAACTTTTTTAATGTTATACTTGGAAACAGAAGTGCCCTCACTGGGGGTAGTAAGAAGGTTGTGGACAGTGGCCCAGATGACCATATTTTCATATTCTATAGTGACCATGGTGGTCCAGGAGTTCTTGGGATGCCTACTAGTCCTTATATTTATGCTAATGATCTCATAGAAGTCTTAAAGAAGAAGCATGCTTCTGGAACCTATAAAAGCTTGGTGTTCTATCTTGAAGCTTGTGAATCTGGAAGTATCTTTGAGGGTCTTCTGCCAGAAGGTTTGAATATCTATGCAACCACTGCAGCAAATGCAGAAGAGAGCAGTTGGGGGACTTATTGTCCTGGAGAGTACCCAAGCCCTCCCCCCGAGTATGAAACTTGCTTGGGTGATTTGTATAGTGTTGCATGGATGGAGGACAGTGACAATCGCAATTTGCAGACAGAGACTTTGCATCAGCAGTACGAACTGGTTAAACAGAGGACTTCCAATGGCAATTCTGCTTATGGGTCTCATGTCATGCAATATGGTGATATGGAGCTGAGCAAGAAGAATCTATTTTTATATATTGGCACAAACCCAGCAAATGAAAACCACACTTTTGTGGACAACAACTCCTTGAGGCCATCCTTAAAAGCTGTAAACCAGCGAGATGCTGATCTTGTCCACTTTTGGTATAAGTTCCGCAAAGCTCCCGAGGGCACTGCTAGAAAAGTGGAAGCACAGAAGCAGTTTTTTGAAGCAATGTCACATAGAATGCACATTGACAACAGCGTTAAACTAGTCGCAAAGTTCTTATTTGGAATCGAAAAAGCCCAAGTAGTGCTCAACTTTATCCGTCCTTCCGGACTCCCCCTTGTTGATGATTGGACCTGTCTTAAGACTCTAGTGAGGACATTTGAGACTCATTGCGGATCCATATCTCAGTATGGGATGAAACATATGAGGTCCTTTGCAAATATCTGTAATGCTGGAATTGGTAAGGATCAGATGGCTGAGGCTGCAGGGCAAGGTTGTGATAAGGTACCTTCTGGTCAATGGAGTTGTCTCCACAGAGGTTTCAGTGCATGA 1479 44.62 MSRCDTGAILLILFAFSSFASSSRDLTGDFLRLPSDASRFFRKGRADDDDESTLGTRWAVLIAGSNGYWNYRHQADVCHAYQVLRKNGLKEENIIVFMYDDIAFNEENPRPGVIINSPNGEDVYKGVPKDYTGEDVTVNNFFNVILGNRSALTGGSKKVVDSGPDDHIFIFYSDHGGPGVLGMPTSPYIYANDLIEVLKKKHASGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTAANAEESSWGTYCPGEYPSPPPEYETCLGDLYSVAWMEDSDNRNLQTETLHQQYELVKQRTSNGNSAYGSHVMQYGDMELSKKNLFLYIGTNPANENHTFVDNNSLRPSLKAVNQRDADLVHFWYKFRKAPEGTARKVEAQKQFFEAMSHRMHIDNSVKLVAKFLFGIEKAQVVLNFIRPSGLPLVDDWTCLKTLVRTFETHCGSISQYGMKHMRSFANICNAGIGKDQMAEAAGQGCDKVPSGQWSCLHRGFSA 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12432892 12435873 - Conep04aG0170200.1 Cone4ag1649 436627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1649 492 Gene3D - 55 351 - -
Cone4ag1649 492 FunFam Vacuolar-processing enzyme beta-isozyme 55 351 - -
Cone4ag1649 492 PIRSF AE 1 492 IPR043577 GO:0004197(InterPro)|GO:0051603(InterPro)
Cone4ag1649 492 Pfam Legumain, prodomain 379 475 IPR048501 -
Cone4ag1649 492 CDD legumain_C 354 475 IPR048501 -
Cone4ag1649 492 Gene3D - 352 482 IPR046427 -
Cone4ag1649 492 FunFam Vacuolar-processing enzyme beta-isozyme 352 480 - -
Cone4ag1649 492 PRINTS Hemoglobinase (C13) cysteine protease signature 130 145 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone4ag1649 492 PRINTS Hemoglobinase (C13) cysteine protease signature 207 223 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone4ag1649 492 PRINTS Hemoglobinase (C13) cysteine protease signature 58 82 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone4ag1649 492 PRINTS Hemoglobinase (C13) cysteine protease signature 158 177 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone4ag1649 492 PRINTS Hemoglobinase (C13) cysteine protease signature 83 112 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone4ag1649 492 PIRSF Legumain 2 492 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone4ag1649 492 Pfam Peptidase C13 family 57 327 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone4ag1649 492 PANTHER HEMOGLOBINASE FAMILY MEMBER 45 475 IPR001096 GO:0004197(PANTHER)|GO:0006508(InterPro)|GO:0006624(PANTHER)|GO:0008233(InterPro)|GO:0051603(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1649 K01369 - - rcu:8275625 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1401 Cone-Chr20:8939056 Cone4ag1649 Cone-Chr4:12432892 1.08E-180 dispersed
Cone4ag1649 Cone-Chr4:12432892 Cone7ag1300 Cone-Chr7:9571417 0 dispersed
Cone6ag0701 Cone-Chr6:3546038 Cone4ag1649 Cone-Chr4:12432892 1.79E-191 transposed
Cone20ag0258 Cone-Chr20:1155359 Cone4ag1649 Cone-Chr4:12432892 2.81E-285 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g53 . . . . Bpe02g01534 . . . Cmo05g00111 Cmo12g00569 . Cma05g00105 . Car12g00576 Sed08g1757 Cpe07g00549 . Bhi04g00491 Tan02g1654 Cmetu02g1720 . Hepe08g1379 . Lcy13g2174 . . . . . . . Cone4ag1649 Cone7ag1300 . Cone20ag0258 . . . . Blo17g00296 Blo18g00291 Bda01g01323 Bda13g01611 Bpe14g00254 . Bma01g00929 . . . . . Cma12g00628 . Car05g00091 Cpe11g00085 . . . . . . . . . . . . . . . Lsi08g01572 Csa02g01849 Chy03g01635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005098 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41