Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1661 | ATGTCGAAGATGAAGCATCTTCTTAGGAAGCTTCACATCGGAGGGGGGATTAACGATCATCAGAGATTGCCGCAAAGTCAGCCAGTAATCGAGACCAACTTGAATCATGATGCATCTGCATCTCCGGTTTCTTCGGATCCAATGGAGAGATTCGAGGCAGTTGATACGCCGAGTGATCGGACGGTTGGGGATGCTGGCGGTGGCTGCGTCGATTTTGATTTATTGGAGGAGGAGTTTCAGTTGCAGATGGCTATGGCGATTAGCGCTTCGGATCCCGGTACAAGAGAAGACCCCGAGTCTGCTCAGATCGATGCCGCAAAGCGGATGAGCCTTGGCTTTTCGTCTTCGGTCTCCGACAGCCAAGCCCTAGTAGGATTGTTATCGCTTCAGTATTGGAGCTATAATGCTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACATTTATGGAATTACTGCAAATTCAATCACGCAAGGGAAGATGCCACTGTTGGTGGATCTCCAAGCTATTTCTGTTTCTAGTGAGGTTGATTATGAAGTGATATTGGTTAATCGCTTAATTGATACTGAACTTCAGGAGTTGGAGAGAGGAGCTTATGCTGTATCCAAGGACTGTAGAGTTTCTGACCACGGACTTATTCTAAGTGGCATTGTTAAAAAAATTGCCGATATTGTTGTTGATAGGATGGGTGGTCCCGTTAGTAATGCTGATGAAATGCTCAGAAGGTGGACTACTAGGAGCTATGAGTTACGAAGGTCTCTTAAATCTATTATTCTACCTATCGGATGTCTTGATGTTGGACTTTCTCGCCATAGGGCTTTGCTTTTCAAGGTTCTAGCTGACAGGATCAATCTACCCTGTATGCTGGTCAAAGGAAGCTACTACACAGGGACTGATGATGGTGCTGTGAACTTGATTAAAATTGACAATGGAAGTGAATATATCATTGATCTAATGGGTGCTCCTGGCACACTCATTCCTTCTGAAGTACCTAGTACCCAGCTACCAAATTATGGCTTTGATCTTAGGCGGTTCTCAGATGTTTCAGAAATCTCAAAATATAAGTTTCTGGCACTTGGTGAAGGAACTCAAACAGTGGAAATTTCAACGTATCTGGGTGAAGGAACCAAAGCTGACAGTTTAATGTCCAAAGAAGTATCCTTTGCAGGTATTCATGCAGAAGAAGCTGGTAAGTATGTTTTTGAAGAAAGTGAAAGTGGAAGGTTGGATGATGAATCTGGGAGGCATCCTGGGTCACATAAACTTTCATGCGGAAGCTCATCAGGCCCACATGTAAAAGCATCGGGTGCACAAAAGAAGAAAGTCAAAAGTGTATCCCAATATGTTATTAGTGCTGCAAAGAACCCTGAGTTTGCTCAAAAACTACATGCTGTGTTGTTAGAAAGTGGTGCATCACCTCCTCCGGATTTGTTTGTAGATATAGACTCTCAAAATATTGGTGGACGAGAACTACCCAGACAAATTCTTCCAGTTAATGGAAGAAGTATAGGTGATGAGTTACCATATAATCGATATGATCAATCAGCAAATCATGAACCATCTACTGGAGTAGACTCTTTGTATACTATCTATGAAAGTCAACAGAAACATTCTGCTGAAGGCTTCGCTAAACAACAAAAAGAATCGGATATAATTTCCAGGAACCACAATATTTCTTCAGTTTCTAGTATGACCAGTGATGGATTTGTGTTTGAGGGTGGTCGAGCCAATGATATGATCCCTGTAGACACTACAGGTGTAAGTAATGCTGTGCTGTGTCCCTCTGGAATGATTGCAAGTGCTTTGGACCAACAATCTGGCGGAGCCTTGTTGACCTTTGAGGCCATGTCTTGCCAAAGACAACTCAATGACAAGAATGGAAGAGTTTTGAATGGAATTGAATTAGGGGAAGAATCATTGGCAAAATTGATGGACATGACACACAGTGTCCCGCAGATTGCTGGTGGTTGTCTCAGTGAGATGATTTTCCCAGAGTTGGGTGAGGTCGCAGAATGGGAAATTCCATGGGACGATCTTCACATTGGTGAACGTATTGGTATTGGTTCATATGGTGAGGTCTATCGTGCTGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCCTGGACCAAGATCTCTCTGGTGATGCATTGGTTCAATTGAAATGTGAAGTTGAAATCATGTTAAGACTGAGACATCCTAATGTTGTCCTCTTCATGGGAGCTGTAACTCGCCCCCCTCATTTCTCTATATTGACTGAGTTTCTTCCCAGGGGAAGTTTGTATAGATTATTGCATCGTCCCAATTCTCAACTTGATGAAAAGAAGCGATTGAGGATGGCTCTTGATGTGGTCAAGGGAATGAATTACTTACACACAAGCCATCCTACCATTGTCCATCGAGATTTAAAATCCCCAAATCTTCTTGTTGATAAAAATTGGGTTGTTAAGGTTTGTGATTTTGGTTTGTCACGCATAAAGAACAACACTTTCCTGTCTTCAAAGTCAACTGCAGGAACGCCTGAATGGATGGCTCCTGAAGTTCTAAGGAATGAACCAGCTAATGAGAAGTGTGATGTATACAGTTTTGGTGTGATTTTGTGGGAATTGGCTACTTGTCAAATCCCATGGAAGGGTTTGAACCCAATGCAAGTAGTTGGAGCTGTTGGATTCCAAAATAGGCGTCTTGAGATTCCAAAAAATGTTGATCCAGCAGTTTCTCAGATTATATGTGATTGCTGGCAAATGGATGCACACTCGAGGCCATCATTTTCTCAACTAATGTCTCGGCTAAGGCATCTTGAGCATCTTGTCATTGATCGACCATCGGATTCTTCAACTGGAAGAACAAGATGA | 2862 | 42.49 | MSKMKHLLRKLHIGGGINDHQRLPQSQPVIETNLNHDASASPVSSDPMERFEAVDTPSDRTVGDAGGGCVDFDLLEEEFQLQMAMAISASDPGTREDPESAQIDAAKRMSLGFSSSVSDSQALVGLLSLQYWSYNAVNYDEKVMDGFYDIYGITANSITQGKMPLLVDLQAISVSSEVDYEVILVNRLIDTELQELERGAYAVSKDCRVSDHGLILSGIVKKIADIVVDRMGGPVSNADEMLRRWTTRSYELRRSLKSIILPIGCLDVGLSRHRALLFKVLADRINLPCMLVKGSYYTGTDDGAVNLIKIDNGSEYIIDLMGAPGTLIPSEVPSTQLPNYGFDLRRFSDVSEISKYKFLALGEGTQTVEISTYLGEGTKADSLMSKEVSFAGIHAEEAGKYVFEESESGRLDDESGRHPGSHKLSCGSSSGPHVKASGAQKKKVKSVSQYVISAAKNPEFAQKLHAVLLESGASPPPDLFVDIDSQNIGGRELPRQILPVNGRSIGDELPYNRYDQSANHEPSTGVDSLYTIYESQQKHSAEGFAKQQKESDIISRNHNISSVSSMTSDGFVFEGGRANDMIPVDTTGVSNAVLCPSGMIASALDQQSGGALLTFEAMSCQRQLNDKNGRVLNGIELGEESLAKLMDMTHSVPQIAGGCLSEMIFPELGEVAEWEIPWDDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGDALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDEKKRLRMALDVVKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRIKNNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELATCQIPWKGLNPMQVVGAVGFQNRRLEIPKNVDPAVSQIICDCWQMDAHSRPSFSQLMSRLRHLEHLVIDRPSDSSTGRTR | 953 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12479695 | 12485816 | - | Conep04aG0171400.1 | Cone4ag1661 | 436639 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1661 | 953 | MobiDBLite | consensus disorder prediction | 405 | 441 | - | - | |
Cone4ag1661 | 953 | FunFam | Serine/threonine-protein kinase isoform 1 | 672 | 759 | - | - | |
Cone4ag1661 | 953 | PRINTS | Tyrosine kinase catalytic domain signature | 755 | 768 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone4ag1661 | 953 | PRINTS | Tyrosine kinase catalytic domain signature | 860 | 882 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone4ag1661 | 953 | PRINTS | Tyrosine kinase catalytic domain signature | 794 | 812 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone4ag1661 | 953 | PRINTS | Tyrosine kinase catalytic domain signature | 841 | 851 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone4ag1661 | 953 | PRINTS | Tyrosine kinase catalytic domain signature | 904 | 926 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone4ag1661 | 953 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 800 | 812 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone4ag1661 | 953 | ProSitePatterns | Protein kinases ATP-binding region signature. | 687 | 709 | IPR017441 | GO:0005524(InterPro) | |
Cone4ag1661 | 953 | SUPERFAMILY | Protein kinase-like (PK-like) | 664 | 932 | IPR011009 | - | |
Cone4ag1661 | 953 | Gene3D | Transferase(Phosphotransferase) domain 1 | 760 | 943 | - | - | |
Cone4ag1661 | 953 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 127 | 328 | - | - | |
Cone4ag1661 | 953 | SMART | serkin_6 | 681 | 941 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone4ag1661 | 953 | ProSiteProfiles | Protein kinase domain profile. | 681 | 941 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone4ag1661 | 953 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 123 | 936 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cone4ag1661 | 953 | MobiDBLite | consensus disorder prediction | 405 | 420 | - | - | |
Cone4ag1661 | 953 | CDD | STKc_MAP3K-like | 687 | 933 | - | - | |
Cone4ag1661 | 953 | FunFam | Serine/threonine-protein kinase CTR1 | 760 | 943 | - | - | |
Cone4ag1661 | 953 | Gene3D | Phosphorylase Kinase; domain 1 | 674 | 758 | - | - | |
Cone4ag1661 | 953 | Pfam | Protein tyrosine and serine/threonine kinase | 681 | 933 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1487 | Cone-Chr12:10611532 | Cone4ag1661 | Cone-Chr4:12479695 | 3.70E-79 | dispersed | |
Cone16ag0342 | Cone-Chr16:4435812 | Cone4ag1661 | Cone-Chr4:12479695 | 4.39E-173 | dispersed | |
Cone19ag0331 | Cone-Chr19:2671450 | Cone4ag1661 | Cone-Chr4:12479695 | 1.14E-215 | dispersed | |
Cone4ag1290 | Cone-Chr4:10664639 | Cone4ag1661 | Cone-Chr4:12479695 | 2.14E-128 | dispersed | |
Cone4ag1661 | Cone-Chr4:12479695 | Cone5ag0529 | Cone-Chr5:2234623 | 1.66E-222 | dispersed | |
Cone17ag0924 | Cone-Chr17:7256256 | Cone4ag1661 | Cone-Chr4:12479695 | 6.99E-167 | wgd | |
Cone20ag0268 | Cone-Chr20:1190376 | Cone4ag1661 | Cone-Chr4:12479695 | 0 | wgd | |
Cone4ag1661 | Cone-Chr4:12479695 | Cone7ag1292 | Cone-Chr7:9521345 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82799 | PF00847 | AP2 | 2.70E-12 | CL0081 | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1661 | K04424 | - | csv:101214554 | 1150.96 |