Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1661 ATGTCGAAGATGAAGCATCTTCTTAGGAAGCTTCACATCGGAGGGGGGATTAACGATCATCAGAGATTGCCGCAAAGTCAGCCAGTAATCGAGACCAACTTGAATCATGATGCATCTGCATCTCCGGTTTCTTCGGATCCAATGGAGAGATTCGAGGCAGTTGATACGCCGAGTGATCGGACGGTTGGGGATGCTGGCGGTGGCTGCGTCGATTTTGATTTATTGGAGGAGGAGTTTCAGTTGCAGATGGCTATGGCGATTAGCGCTTCGGATCCCGGTACAAGAGAAGACCCCGAGTCTGCTCAGATCGATGCCGCAAAGCGGATGAGCCTTGGCTTTTCGTCTTCGGTCTCCGACAGCCAAGCCCTAGTAGGATTGTTATCGCTTCAGTATTGGAGCTATAATGCTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACATTTATGGAATTACTGCAAATTCAATCACGCAAGGGAAGATGCCACTGTTGGTGGATCTCCAAGCTATTTCTGTTTCTAGTGAGGTTGATTATGAAGTGATATTGGTTAATCGCTTAATTGATACTGAACTTCAGGAGTTGGAGAGAGGAGCTTATGCTGTATCCAAGGACTGTAGAGTTTCTGACCACGGACTTATTCTAAGTGGCATTGTTAAAAAAATTGCCGATATTGTTGTTGATAGGATGGGTGGTCCCGTTAGTAATGCTGATGAAATGCTCAGAAGGTGGACTACTAGGAGCTATGAGTTACGAAGGTCTCTTAAATCTATTATTCTACCTATCGGATGTCTTGATGTTGGACTTTCTCGCCATAGGGCTTTGCTTTTCAAGGTTCTAGCTGACAGGATCAATCTACCCTGTATGCTGGTCAAAGGAAGCTACTACACAGGGACTGATGATGGTGCTGTGAACTTGATTAAAATTGACAATGGAAGTGAATATATCATTGATCTAATGGGTGCTCCTGGCACACTCATTCCTTCTGAAGTACCTAGTACCCAGCTACCAAATTATGGCTTTGATCTTAGGCGGTTCTCAGATGTTTCAGAAATCTCAAAATATAAGTTTCTGGCACTTGGTGAAGGAACTCAAACAGTGGAAATTTCAACGTATCTGGGTGAAGGAACCAAAGCTGACAGTTTAATGTCCAAAGAAGTATCCTTTGCAGGTATTCATGCAGAAGAAGCTGGTAAGTATGTTTTTGAAGAAAGTGAAAGTGGAAGGTTGGATGATGAATCTGGGAGGCATCCTGGGTCACATAAACTTTCATGCGGAAGCTCATCAGGCCCACATGTAAAAGCATCGGGTGCACAAAAGAAGAAAGTCAAAAGTGTATCCCAATATGTTATTAGTGCTGCAAAGAACCCTGAGTTTGCTCAAAAACTACATGCTGTGTTGTTAGAAAGTGGTGCATCACCTCCTCCGGATTTGTTTGTAGATATAGACTCTCAAAATATTGGTGGACGAGAACTACCCAGACAAATTCTTCCAGTTAATGGAAGAAGTATAGGTGATGAGTTACCATATAATCGATATGATCAATCAGCAAATCATGAACCATCTACTGGAGTAGACTCTTTGTATACTATCTATGAAAGTCAACAGAAACATTCTGCTGAAGGCTTCGCTAAACAACAAAAAGAATCGGATATAATTTCCAGGAACCACAATATTTCTTCAGTTTCTAGTATGACCAGTGATGGATTTGTGTTTGAGGGTGGTCGAGCCAATGATATGATCCCTGTAGACACTACAGGTGTAAGTAATGCTGTGCTGTGTCCCTCTGGAATGATTGCAAGTGCTTTGGACCAACAATCTGGCGGAGCCTTGTTGACCTTTGAGGCCATGTCTTGCCAAAGACAACTCAATGACAAGAATGGAAGAGTTTTGAATGGAATTGAATTAGGGGAAGAATCATTGGCAAAATTGATGGACATGACACACAGTGTCCCGCAGATTGCTGGTGGTTGTCTCAGTGAGATGATTTTCCCAGAGTTGGGTGAGGTCGCAGAATGGGAAATTCCATGGGACGATCTTCACATTGGTGAACGTATTGGTATTGGTTCATATGGTGAGGTCTATCGTGCTGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCCTGGACCAAGATCTCTCTGGTGATGCATTGGTTCAATTGAAATGTGAAGTTGAAATCATGTTAAGACTGAGACATCCTAATGTTGTCCTCTTCATGGGAGCTGTAACTCGCCCCCCTCATTTCTCTATATTGACTGAGTTTCTTCCCAGGGGAAGTTTGTATAGATTATTGCATCGTCCCAATTCTCAACTTGATGAAAAGAAGCGATTGAGGATGGCTCTTGATGTGGTCAAGGGAATGAATTACTTACACACAAGCCATCCTACCATTGTCCATCGAGATTTAAAATCCCCAAATCTTCTTGTTGATAAAAATTGGGTTGTTAAGGTTTGTGATTTTGGTTTGTCACGCATAAAGAACAACACTTTCCTGTCTTCAAAGTCAACTGCAGGAACGCCTGAATGGATGGCTCCTGAAGTTCTAAGGAATGAACCAGCTAATGAGAAGTGTGATGTATACAGTTTTGGTGTGATTTTGTGGGAATTGGCTACTTGTCAAATCCCATGGAAGGGTTTGAACCCAATGCAAGTAGTTGGAGCTGTTGGATTCCAAAATAGGCGTCTTGAGATTCCAAAAAATGTTGATCCAGCAGTTTCTCAGATTATATGTGATTGCTGGCAAATGGATGCACACTCGAGGCCATCATTTTCTCAACTAATGTCTCGGCTAAGGCATCTTGAGCATCTTGTCATTGATCGACCATCGGATTCTTCAACTGGAAGAACAAGATGA 2862 42.49 MSKMKHLLRKLHIGGGINDHQRLPQSQPVIETNLNHDASASPVSSDPMERFEAVDTPSDRTVGDAGGGCVDFDLLEEEFQLQMAMAISASDPGTREDPESAQIDAAKRMSLGFSSSVSDSQALVGLLSLQYWSYNAVNYDEKVMDGFYDIYGITANSITQGKMPLLVDLQAISVSSEVDYEVILVNRLIDTELQELERGAYAVSKDCRVSDHGLILSGIVKKIADIVVDRMGGPVSNADEMLRRWTTRSYELRRSLKSIILPIGCLDVGLSRHRALLFKVLADRINLPCMLVKGSYYTGTDDGAVNLIKIDNGSEYIIDLMGAPGTLIPSEVPSTQLPNYGFDLRRFSDVSEISKYKFLALGEGTQTVEISTYLGEGTKADSLMSKEVSFAGIHAEEAGKYVFEESESGRLDDESGRHPGSHKLSCGSSSGPHVKASGAQKKKVKSVSQYVISAAKNPEFAQKLHAVLLESGASPPPDLFVDIDSQNIGGRELPRQILPVNGRSIGDELPYNRYDQSANHEPSTGVDSLYTIYESQQKHSAEGFAKQQKESDIISRNHNISSVSSMTSDGFVFEGGRANDMIPVDTTGVSNAVLCPSGMIASALDQQSGGALLTFEAMSCQRQLNDKNGRVLNGIELGEESLAKLMDMTHSVPQIAGGCLSEMIFPELGEVAEWEIPWDDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGDALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDEKKRLRMALDVVKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRIKNNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELATCQIPWKGLNPMQVVGAVGFQNRRLEIPKNVDPAVSQIICDCWQMDAHSRPSFSQLMSRLRHLEHLVIDRPSDSSTGRTR 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12479695 12485816 - Conep04aG0171400.1 Cone4ag1661 436639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1661 953 MobiDBLite consensus disorder prediction 405 441 - -
Cone4ag1661 953 FunFam Serine/threonine-protein kinase isoform 1 672 759 - -
Cone4ag1661 953 PRINTS Tyrosine kinase catalytic domain signature 755 768 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1661 953 PRINTS Tyrosine kinase catalytic domain signature 860 882 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1661 953 PRINTS Tyrosine kinase catalytic domain signature 794 812 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1661 953 PRINTS Tyrosine kinase catalytic domain signature 841 851 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1661 953 PRINTS Tyrosine kinase catalytic domain signature 904 926 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1661 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1661 953 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524(InterPro)
Cone4ag1661 953 SUPERFAMILY Protein kinase-like (PK-like) 664 932 IPR011009 -
Cone4ag1661 953 Gene3D Transferase(Phosphotransferase) domain 1 760 943 - -
Cone4ag1661 953 Pfam Ethylene-responsive protein kinase Le-CTR1 127 328 - -
Cone4ag1661 953 SMART serkin_6 681 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1661 953 ProSiteProfiles Protein kinase domain profile. 681 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1661 953 PANTHER SERINE-THREONINE PROTEIN KINASE 123 936 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone4ag1661 953 MobiDBLite consensus disorder prediction 405 420 - -
Cone4ag1661 953 CDD STKc_MAP3K-like 687 933 - -
Cone4ag1661 953 FunFam Serine/threonine-protein kinase CTR1 760 943 - -
Cone4ag1661 953 Gene3D Phosphorylase Kinase; domain 1 674 758 - -
Cone4ag1661 953 Pfam Protein tyrosine and serine/threonine kinase 681 933 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1487 Cone-Chr12:10611532 Cone4ag1661 Cone-Chr4:12479695 3.70E-79 dispersed
Cone16ag0342 Cone-Chr16:4435812 Cone4ag1661 Cone-Chr4:12479695 4.39E-173 dispersed
Cone19ag0331 Cone-Chr19:2671450 Cone4ag1661 Cone-Chr4:12479695 1.14E-215 dispersed
Cone4ag1290 Cone-Chr4:10664639 Cone4ag1661 Cone-Chr4:12479695 2.14E-128 dispersed
Cone4ag1661 Cone-Chr4:12479695 Cone5ag0529 Cone-Chr5:2234623 1.66E-222 dispersed
Cone17ag0924 Cone-Chr17:7256256 Cone4ag1661 Cone-Chr4:12479695 6.99E-167 wgd
Cone20ag0268 Cone-Chr20:1190376 Cone4ag1661 Cone-Chr4:12479695 0 wgd
Cone4ag1661 Cone-Chr4:12479695 Cone7ag1292 Cone-Chr7:9521345 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82799 PF00847 AP2 2.70E-12 CL0081 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1661 K04424 - csv:101214554 1150.96