Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1669 ATGAAATGGAAAATATGGAGGAGCCCATCTGGGGATCTAAGCTCTGCTTGGAAGAGGGGATTCAAAGGGGGCCGTAAAGCTGCTTCTGAAGGCTCCGATTCTCCACGTGCAGGTACACCTGATAATGCTTTTACAGCTGCTATGGCTACACTTGTTCGAGCTCCACCTAAAGATTTCAGGGTCGTTAGACAAGAGTGGGCTGCGATCCGGATCCAAACTGCTTTTCGCGCCTTCTTGGCAAGAAGAGCTAGGCGGGCCTTGAAAGGGATAGTAAGGCTTCAAGCACTAGTTCGGGGCCGACAGGTGAGGAAGCAGGCTGCCGTGACACTGCGGTGCATGCAGGCGCTTGTTCGGGTCCAGGCCCGAGTTAGAGCCCGTCATGTCAGAATGTCCATGGAGGGCCAAGCTGTCCAGCAAATGCTCGATACTCGCCGCTCCGAGGCAGATCTCCTAAAACAAGCTGAGGAAGGGTGGTGTGATAGAAAAGGAACACTAGAAGATGTCAAAGCAAAGATTCAAATGAGACAACAAGGAGCCTTTAAACGAGAGAGAGCAATAGCATATGCCATTTATCAGAAGCAAACTACTACCCCATGTTCAATATCTCAATCGAATGCCTCAATTCCCTCCCTGAAGAGCAATAACAACCTTGACAAGACCAGCTCGGGATGGAGCTGGTTAGAACGATGGATGGCAGCTAAACCATGGGAAGCCCGGTTAATGGAACAGCAATCATCATATAACCCTGACCAGTTTGACACAACTTCTACTCCACCGCCTTCAAAGAGTTGTAATAATAAAATGAAGAATTCGGAACCGTCCTATGTTAAAGTAAGAAAGAACAATGTTAGTACAAGAATTTCGGCTAAGCCACCTCATTTCGGTCAAGCTATCAGATCATCTTCAAGTCCGAGTTCTGATTTCCGGTATCATGATGAGAGCTCTGCTTCTTCTTTTTGCACGTCCACAACTCCTGGATCAGGTAATAATACTGTAATGGGTTTGGATAAATCAGAGGATAGTGGAAACTGTCGTCCGAGTTATATGAATTTGACCGAGTCAACTAAGGCAAAGCAAAGAGGAAATGGTTATTCAAACACTAGAACTCAAAGGCAGTGCATGGATGAGTTCCAGTTTCTTAAGAAGTCTGGAGCTTTCTCAAATGGGGACTCGAAAAGCAGTGCCGGTTCCAATCCTTCCATCAATTTTTCTGAACCTTTGATCCAGCCAACTGGACTCGAAAAGAAGACAATTACAATGAGGTGA 1266 46.45 MKWKIWRSPSGDLSSAWKRGFKGGRKAASEGSDSPRAGTPDNAFTAAMATLVRAPPKDFRVVRQEWAAIRIQTAFRAFLARRARRALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARHVRMSMEGQAVQQMLDTRRSEADLLKQAEEGWCDRKGTLEDVKAKIQMRQQGAFKRERAIAYAIYQKQTTTPCSISQSNASIPSLKSNNNLDKTSSGWSWLERWMAAKPWEARLMEQQSSYNPDQFDTTSTPPPSKSCNNKMKNSEPSYVKVRKNNVSTRISAKPPHFGQAIRSSSSPSSDFRYHDESSASSFCTSTTPGSGNNTVMGLDKSEDSGNCRPSYMNLTESTKAKQRGNGYSNTRTQRQCMDEFQFLKKSGAFSNGDSKSSAGSNPSINFSEPLIQPTGLEKKTITMR 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12509334 12510946 - Conep04aG0172200.1 Cone4ag1669 436647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1669 421 Pfam IQ calmodulin-binding motif 66 82 IPR000048 GO:0005515(InterPro)
Cone4ag1669 421 ProSiteProfiles IQ motif profile. 88 115 - -
Cone4ag1669 421 PANTHER IQ-DOMAIN 5-RELATED 39 365 - -
Cone4ag1669 421 MobiDBLite consensus disorder prediction 387 407 - -
Cone4ag1669 421 MobiDBLite consensus disorder prediction 287 367 - -
Cone4ag1669 421 MobiDBLite consensus disorder prediction 387 421 - -
Cone4ag1669 421 ProSiteProfiles IQ motif profile. 64 92 - -
Cone4ag1669 421 MobiDBLite consensus disorder prediction 246 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1669 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1669 Cone-Chr4:12509334 Cone5ag1312 Cone-Chr5:7581605 1.67E-36 dispersed
Cone17ag0933 Cone-Chr17:7298473 Cone4ag1669 Cone-Chr4:12509334 5.65E-106 wgd
Cone20ag0275 Cone-Chr20:1221713 Cone4ag1669 Cone-Chr4:12509334 8.81E-108 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39