Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1678 ATGGAGGATCAACAAGGGGGGGAGAGTAAGGGAGAAGAGGAAGTGCTTGGATCGAGCTTAACGATGGAGAAGGTGGCTGCGGCGAAGAAGCTTATAGAGAACCACTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAAGAGAGACGATGGGTGTTAGAGAGAAGACTTGCATCGTCTGATGTGCCTAAAGAGGAGCAGATCAACCTTATTAAAGATCTAGAGAGGAAAGAGACAGAGTTTATGCGGCTGAAAAGGCACAAGATATGCGTAGATGATTTTGAGCTATTAACCATCATTGGAAGGGGGGCATTTGGTGAGGTTCGATTGTGTCGGGAGAAGAAATCTGGCAATATATATGCCATGAAGAAATTGAAGAAGTCCGAAATGGTTAAGAGAGGACAGGTGGAACATGTCAGAGCGGAGAGAAACTTGCTAGCAGAAGTTGCCAGTCATTGCATAGTGAAACTTTACTACTCATTTCAGGACACAGAGTATTTGTATTTGATCATGGAATACCTTCCAGGTGGTGATGTGATGACTCTGCTGATGAGAGAAGACACATTAACTGAAAACGTGGCTAAATTTTACATTGCTCAAAGTGTCCTCGCAATAGAATCTATTCACAAGCACAACTACATTCACAGAGATATTAAACCAGACAACCTTCTTCTGGACAAAAATGGTCACATGAAGCTCTCGGACTTTGGCCTATGTAAACCCCTTGATTGTTCAACCCTATCTACGCTGCATGAAAACAAAACCATAGATGACGAAAATTCGGCAGAACCAATGGAAATCGACAGTGTTCCGGATGCTTCCAATCAGCCTATTTGGAAAAGCCCTCTTGAGCAGCTTCAGCATTGGCAGAGGAACCGAAGGAAGTTGGCATTTTCAACTGTAGGGACGCCAGATTATATCGCCCCTGAAGTATTACTGAAAAAGGGATATGGGATGGAATGTGACTGGTGGTCTCTTGGTGCTATAATGTATGAAATGCTTGTAGGTTACCCTCCGTTTTATTCAGATGACCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTAACATACCCAGAAGACGCAAAGCTGTCCCCGAAGGCTAAGGATCTTATCTGTAGGTTGCTATGTGATGTTGACAATAGGCTAGGTAGCGGAGGAGTGTACCAAATAAAAGCTCATCCTTGGTTCAATGACGTTGTATGGGATAAACTTTATGAAATGGAGGCAGCATTCAAGCCGGAAGTAAACGGAGAACTTGACACCCAGAATTTTATGAAGTTTGACGAATTGGATCCTCCTACACCAGCAAGAACTGGCTCTGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTTAGCTTTGTTGGATATACATACAAGAACTTCGATGCTGTCAAAGGGCGTCACCTGTTTGATCCTGATAGAAGTATGTCATCAGGACAGCCACCAACAAAGACTATCTACAATGACTCTAGGGCAGATTATAGTAGTGATCTAATAGCCGATGAATCCGAGGTGCAGATGCTAGCATTGTCAGGCATTAGGTCGAAAGATTTGTAA 1575 43.37 MEDQQGGESKGEEEVLGSSLTMEKVAAAKKLIENHYRAQMKNIQERKERRWVLERRLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMVKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDVMTLLMREDTLTENVAKFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSTLSTLHENKTIDDENSAEPMEIDSVPDASNQPIWKSPLEQLQHWQRNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLTYPEDAKLSPKAKDLICRLLCDVDNRLGSGGVYQIKAHPWFNDVVWDKLYEMEAAFKPEVNGELDTQNFMKFDELDPPTPARTGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGRHLFDPDRSMSSGQPPTKTIYNDSRADYSSDLIADESEVQMLALSGIRSKDL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12544530 12548566 + Conep04aG0173200.1 Cone4ag1678 436656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1678 524 ProSiteProfiles AGC-kinase C-terminal domain profile. 401 474 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1678 524 FunFam Non-specific serine/threonine protein kinase 299 418 - -
Cone4ag1678 524 ProSiteProfiles Protein kinase domain profile. 94 400 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1678 524 FunFam Non-specific serine/threonine protein kinase 55 177 - -
Cone4ag1678 524 Pfam Protein kinase C terminal domain 419 464 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1678 524 FunFam Non-specific serine/threonine protein kinase 419 429 - -
Cone4ag1678 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone4ag1678 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 468 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cone4ag1678 524 CDD MobB_NDR_LATS-like 28 89 - -
Cone4ag1678 524 CDD STKc_NDR_like 92 465 - -
Cone4ag1678 524 FunFam Non-specific serine/threonine protein kinase 178 245 - -
Cone4ag1678 524 Gene3D Transferase(Phosphotransferase) domain 1 178 245 - -
Cone4ag1678 524 Gene3D Transferase(Phosphotransferase) domain 1 299 418 - -
Cone4ag1678 524 SMART serkin_6 94 400 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1678 524 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524(InterPro)
Cone4ag1678 524 Pfam Protein kinase domain 297 400 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1678 524 Pfam Protein kinase domain 95 245 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1678 524 MobiDBLite consensus disorder prediction 476 495 - -
Cone4ag1678 524 SUPERFAMILY Protein kinase-like (PK-like) 78 447 IPR011009 -
Cone4ag1678 524 SMART pkinase_C_6 401 466 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone4ag1678 524 Gene3D Phosphorylase Kinase; domain 1 419 429 - -
Cone4ag1678 524 Gene3D Phosphorylase Kinase; domain 1 92 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0165 Cone-Chr15:793624 Cone4ag1678 Cone-Chr4:12544530 1.39E-227 dispersed
Cone4ag1678 Cone-Chr4:12544530 Cone5ag1534 Cone-Chr5:10521986 2.46E-219 dispersed
Cone4ag1678 Cone-Chr4:12544530 Cone7ag0749 Cone-Chr7:4583179 4.46E-261 wgd
Cone4ag1678 Cone-Chr4:12544530 Cone7ag1274 Cone-Chr7:9450042 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82800 PF08282 Hydrolase_3 6.00E-27 CL0137 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1678 K08790 - cit:102627835 906.746