Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1687 ATGGACGGGGGTGATCCGTACAATCCACGTACTGTGGAGGAGGTTTTCAGGGATTTCAAGGGTCGTAGAGCCGGCATGATTAAAGCTCTCACTACCGACGTTGAAGAGTTCTATCATTACTGCGATCCTGAGAAGCAAAATCTTTGCCTTTATGGATTTCCCAGTGAACAGTGGGAAGTTAATTTACCTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTTGGTATCAACTTCGCCCAAGATGGAATGCAGGAAAAGGACTGGTTATCCTTGGTAGCTGTCCACAGTGATGCCTGGTTACTGTCCGTGGCCTTCTATTTTGGTGCTAGGTTTAGATTTGACAAAGCTGACAGGAAACGCCTCTTTAATATGATCAATGATCTTCCGACAATATTTGAGGTTGTAACAGGGACAGCCAAGAAGCAAGTCAAGGATAAATCATCTGTTTCAAATCACAGCAGCAACAAATCTAAGTCAAATCCAAAGCGTGCTTCTGAACCTCAAGGAAAGTTTTTGAAGGTAATGCAACCAAAGGACGAGGAAGAGGAGGGTTTGGAAGAGGAGGAAGAAGAAGAAGAAGAAGATGAAAATGGAGAGACACTATGCGGAGCTTGTGGAGAGAACTATGCATCTGATGAGTTCTGGATCTGCTGTGATATCTGTGAGAAGTGGTTCCATGGCAAGTGCGTTAAGATCACCCCAGCAAGGGCAGGGCATATCAAGCAGTACAAATGCCCTTCTTGCAGCAACAAGAGAGCCCAACCGTGA 774 45.99 MDGGDPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYHYCDPEKQNLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFAQDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFRFDKADRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRASEPQGKFLKVMQPKDEEEEGLEEEEEEEEEDENGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAGHIKQYKCPSCSNKRAQP 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12572850 12575513 - Conep04aG0174100.1 Cone4ag1687 436665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1687 257 FunFam PHD finger alfin-like protein 196 252 - -
Cone4ag1687 257 MobiDBLite consensus disorder prediction 145 201 - -
Cone4ag1687 257 MobiDBLite consensus disorder prediction 183 201 - -
Cone4ag1687 257 CDD PHD_AL_plant 203 253 IPR044104 -
Cone4ag1687 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 252 IPR013083 -
Cone4ag1687 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Cone4ag1687 257 Pfam PHD-finger 204 250 IPR019787 -
Cone4ag1687 257 SUPERFAMILY FYVE/PHD zinc finger 192 254 IPR011011 -
Cone4ag1687 257 SMART PHD_3 203 251 IPR001965 -
Cone4ag1687 257 MobiDBLite consensus disorder prediction 145 166 - -
Cone4ag1687 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Cone4ag1687 257 PANTHER CPG BINDING PROTEIN 8 256 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone4ag1687 257 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone4ag1687 257 Coils Coil 180 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1687 K26274 - - rcu:8258558 446.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1687 Cone-Chr4:12572850 Cone9ag1035 Cone-Chr9:5544361 1.73E-34 dispersed
Cone4ag1687 Cone-Chr4:12572850 Cone7ag1605 Cone-Chr7:10940102 6.29E-167 wgd
Cone4ag1687 Cone-Chr4:12572850 Cone7ag0758 Cone-Chr7:4685575 3.34E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0883 . 1 250 Alfin-like Transcription Factor Family AT1G14510 85.2 6.9e-114 407.5
Cone13ag0701 . 1 253 Alfin-like Transcription Factor Family AT1G14510 82.2 4.5e-113 404.8
Cone10ag0852 . 1 250 Alfin-like Transcription Factor Family AT1G14510 84.4 5.0e-112 401.4
Cone19ag0696 . 1 252 Alfin-like Transcription Factor Family AT1G14510 80.6 1.4e-109 393.3
Cone7ag1605 . 1 251 Alfin-like Transcription Factor Family AT1G14510 72.9 1.5e-95 346.7
Cone7ag0758 . 9 247 Alfin-like Transcription Factor Family AT1G14510 68.4 8.8e-93 337.4
Cone4ag1687 . 1 254 Alfin-like Transcription Factor Family AT1G14510 72.8 4.4e-92 335.1
Cone4ag0807 . 9 247 Alfin-like Transcription Factor Family AT1G14510 65.7 4.1e-90 328.6
Cone3ag0428 . 7 236 Alfin-like Transcription Factor Family AT1G14510 60.0 3.6e-78 288.9
Cone10ag0390 . 7 216 Alfin-like Transcription Factor Family AT1G14510 53.8 2.3e-64 243.0
Cone9ag1035 . 1 124 Alfin-like Transcription Factor Family AT1G14510 71.8 1.5e-36 150.6
Cone7ag1605 . 1 253 Alfin-like Transcription Factor Family AT5G26210 79.9 7.3e-111 397.5
Cone7ag0758 . 1 249 Alfin-like Transcription Factor Family AT5G26210 72.8 7.5e-108 387.5
Cone4ag1687 . 1 255 Alfin-like Transcription Factor Family AT5G26210 79.6 1.3e-107 386.7
Cone4ag0807 . 1 249 Alfin-like Transcription Factor Family AT5G26210 71.7 9.2e-106 380.6
Cone19ag0696 . 1 252 Alfin-like Transcription Factor Family AT5G26210 70.2 2.0e-92 336.3
Cone13ag0701 . 1 253 Alfin-like Transcription Factor Family AT5G26210 71.1 6.4e-91 331.3
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT5G26210 71.1 1.9e-90 329.7
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT5G26210 70.7 1.3e-88 323.6
Cone3ag0428 . 4 238 Alfin-like Transcription Factor Family AT5G26210 59.4 1.2e-81 300.4
Cone10ag0390 . 4 218 Alfin-like Transcription Factor Family AT5G26210 53.0 1.1e-66 250.8
Cone7ag1605 . 3 253 Alfin-like Transcription Factor Family AT3G42790 75.8 6.7e-101 364.4
Cone7ag0758 . 1 249 Alfin-like Transcription Factor Family AT3G42790 68.9 2.8e-99 359.0
Cone4ag0807 . 1 249 Alfin-like Transcription Factor Family AT3G42790 68.1 5.9e-97 351.3
Cone4ag1687 . 1 255 Alfin-like Transcription Factor Family AT3G42790 73.5 8.5e-96 347.4
Cone13ag0701 . 9 253 Alfin-like Transcription Factor Family AT3G42790 71.0 5.3e-90 328.2
Cone19ag0696 . 9 252 Alfin-like Transcription Factor Family AT3G42790 70.4 9.1e-90 327.4
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT3G42790 71.8 1.2e-89 327.0
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT3G42790 72.2 3.4e-89 325.5
Cone3ag0428 . 6 238 Alfin-like Transcription Factor Family AT3G42790 59.8 4.5e-81 298.5
Cone10ag0390 . 6 218 Alfin-like Transcription Factor Family AT3G42790 53.5 5.7e-68 255.0
Cone3ag0428 . 6 239 Alfin-like Transcription Factor Family AT5G05610 78.7 5.8e-110 394.4
Cone10ag0390 . 4 219 Alfin-like Transcription Factor Family AT5G05610 71.7 8.2e-96 347.4
Cone7ag0758 . 8 249 Alfin-like Transcription Factor Family AT5G05610 64.2 8.7e-90 327.4
Cone4ag0807 . 8 249 Alfin-like Transcription Factor Family AT5G05610 65.0 3.3e-89 325.5
Cone7ag1605 . 8 253 Alfin-like Transcription Factor Family AT5G05610 64.0 1.3e-88 323.6
Cone4ag1687 . 8 256 Alfin-like Transcription Factor Family AT5G05610 61.6 7.7e-86 314.3
Cone13ag0701 . 9 249 Alfin-like Transcription Factor Family AT5G05610 63.9 3.6e-83 305.4
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT5G05610 62.3 6.1e-83 304.7
Cone19ag0696 . 9 251 Alfin-like Transcription Factor Family AT5G05610 63.8 6.1e-83 304.7
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT5G05610 61.5 8.8e-82 300.8
Cone3ag0428 . 43 239 Alfin-like Transcription Factor Family AT3G11200 80.6 2.0e-91 332.8
Cone10ag0390 . 33 219 Alfin-like Transcription Factor Family AT3G11200 75.9 2.3e-79 292.7
Cone4ag0807 . 44 249 Alfin-like Transcription Factor Family AT3G11200 64.3 2.2e-74 276.2
Cone7ag0758 . 44 249 Alfin-like Transcription Factor Family AT3G11200 63.8 2.2e-74 276.2
Cone7ag1605 . 44 253 Alfin-like Transcription Factor Family AT3G11200 66.0 6.5e-74 274.6
Cone4ag1687 . 44 256 Alfin-like Transcription Factor Family AT3G11200 62.8 1.1e-70 263.8
Cone3ag0883 . 44 252 Alfin-like Transcription Factor Family AT3G11200 62.7 3.1e-68 255.8
Cone13ag0701 . 44 249 Alfin-like Transcription Factor Family AT3G11200 63.8 2.0e-67 253.1
Cone19ag0696 . 44 251 Alfin-like Transcription Factor Family AT3G11200 62.7 3.5e-67 252.3
Cone10ag0852 . 44 252 Alfin-like Transcription Factor Family AT3G11200 61.2 1.3e-66 250.4
Cone3ag0883 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 3.8e-75 278.9
Cone13ag0701 . 1 161 Alfin-like Transcription Factor Family AT2G02470 84.5 1.1e-74 277.3
Cone10ag0852 . 1 161 Alfin-like Transcription Factor Family AT2G02470 84.5 1.9e-74 276.6
Cone19ag0696 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.2 2.4e-74 276.2
Cone7ag1605 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.3 3.9e-64 242.3
Cone7ag0758 . 1 158 Alfin-like Transcription Factor Family AT2G02470 73.4 7.4e-63 238.0
Cone4ag1687 . 9 158 Alfin-like Transcription Factor Family AT2G02470 77.3 2.8e-62 236.1
Cone4ag0807 . 1 158 Alfin-like Transcription Factor Family AT2G02470 72.2 8.2e-62 234.6
Cone3ag0428 . 7 154 Alfin-like Transcription Factor Family AT2G02470 68.2 1.8e-53 206.8
Cone10ag0390 . 7 134 Alfin-like Transcription Factor Family AT2G02470 58.3 5.1e-40 162.2
Cone7ag1605 . 3 167 Alfin-like Transcription Factor Family AT5G20510 78.2 6.9e-74 274.2
Cone4ag0807 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.6 6.5e-72 267.7
Cone7ag0758 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 8.5e-72 267.3
Cone4ag1687 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.2 1.9e-71 266.2
Cone3ag0883 . 3 163 Alfin-like Transcription Factor Family AT5G20510 73.0 2.2e-64 242.7
Cone10ag0852 . 3 163 Alfin-like Transcription Factor Family AT5G20510 72.4 1.1e-63 240.4
Cone13ag0701 . 6 163 Alfin-like Transcription Factor Family AT5G20510 72.5 9.4e-63 237.3
Cone19ag0696 . 6 163 Alfin-like Transcription Factor Family AT5G20510 70.6 1.0e-61 233.8
Cone3ag0428 . 6 144 Alfin-like Transcription Factor Family AT5G20510 68.5 5.2e-53 204.9
Cone10ag0390 . 6 124 Alfin-like Transcription Factor Family AT5G20510 58.7 5.0e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46042 PF06219 DUF1005 5.30E-206 No_clan Cone TF