Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1687 ATGGACGGGGGTGATCCGTACAATCCACGTACTGTGGAGGAGGTTTTCAGGGATTTCAAGGGTCGTAGAGCCGGCATGATTAAAGCTCTCACTACCGACGTTGAAGAGTTCTATCATTACTGCGATCCTGAGAAGCAAAATCTTTGCCTTTATGGATTTCCCAGTGAACAGTGGGAAGTTAATTTACCTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTTGGTATCAACTTCGCCCAAGATGGAATGCAGGAAAAGGACTGGTTATCCTTGGTAGCTGTCCACAGTGATGCCTGGTTACTGTCCGTGGCCTTCTATTTTGGTGCTAGGTTTAGATTTGACAAAGCTGACAGGAAACGCCTCTTTAATATGATCAATGATCTTCCGACAATATTTGAGGTTGTAACAGGGACAGCCAAGAAGCAAGTCAAGGATAAATCATCTGTTTCAAATCACAGCAGCAACAAATCTAAGTCAAATCCAAAGCGTGCTTCTGAACCTCAAGGAAAGTTTTTGAAGGTAATGCAACCAAAGGACGAGGAAGAGGAGGGTTTGGAAGAGGAGGAAGAAGAAGAAGAAGAAGATGAAAATGGAGAGACACTATGCGGAGCTTGTGGAGAGAACTATGCATCTGATGAGTTCTGGATCTGCTGTGATATCTGTGAGAAGTGGTTCCATGGCAAGTGCGTTAAGATCACCCCAGCAAGGGCAGGGCATATCAAGCAGTACAAATGCCCTTCTTGCAGCAACAAGAGAGCCCAACCGTGA 774 45.99 MDGGDPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYHYCDPEKQNLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFAQDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFRFDKADRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRASEPQGKFLKVMQPKDEEEEGLEEEEEEEEEDENGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAGHIKQYKCPSCSNKRAQP 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12572850 12575513 - Conep04aG0174100.1 Cone4ag1687 436665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1687 257 FunFam PHD finger alfin-like protein 196 252 - -
Cone4ag1687 257 MobiDBLite consensus disorder prediction 145 201 - -
Cone4ag1687 257 MobiDBLite consensus disorder prediction 183 201 - -
Cone4ag1687 257 CDD PHD_AL_plant 203 253 IPR044104 -
Cone4ag1687 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 252 IPR013083 -
Cone4ag1687 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Cone4ag1687 257 Pfam PHD-finger 204 250 IPR019787 -
Cone4ag1687 257 SUPERFAMILY FYVE/PHD zinc finger 192 254 IPR011011 -
Cone4ag1687 257 SMART PHD_3 203 251 IPR001965 -
Cone4ag1687 257 MobiDBLite consensus disorder prediction 145 166 - -
Cone4ag1687 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Cone4ag1687 257 PANTHER CPG BINDING PROTEIN 8 256 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone4ag1687 257 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone4ag1687 257 Coils Coil 180 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1687 Cone-Chr4:12572850 Cone9ag1035 Cone-Chr9:5544361 1.73E-34 dispersed
Cone4ag1687 Cone-Chr4:12572850 Cone7ag1605 Cone-Chr7:10940102 6.29E-167 wgd
Cone4ag1687 Cone-Chr4:12572850 Cone7ag0758 Cone-Chr7:4685575 3.34E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46042 PF06219 DUF1005 5.30E-206 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1687 K26274 - rcu:8258558 446.047