Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1693 ATGGGGGGCGGTGTCCATGAAAAGCCTCCTAGAACAGGGGATATTGTAAGAAATTCTGAAAACAAAACTTCAGATGCAAGCGACGACGTTGTACTTGAAATCTCAAGAGACACCACTAATGGTTCTCCTCCCTCCACCGCCGGTTTCACGACGCCGGTTGTCGGCTCCTCCGCTTCGCCGGAAAACTCATCTAATAAGCCTCCAAAGATCCCTCCCAAGCTAAGTGAACCACCTGCTCTTCTGAAAAGGTCAATCTACTCTAAACCAAAATCAAGATTTGGGGAACAACCAGTTCGCATTGACTCCAAAGTGTTTGAAGAAAAGCTCAATCCTATCTTGAGAGAACAAATCGCACCCCCTGCTCCGTCTGCTGATCAAAAGGATGAAGAAGATGAAGAGGCCGAGATCTTCAAGAAAGTAGAGTTGAACAGAGTGAAGCGCCAAAGGGTAAAGTTCAAAACTTTAGTCCAATTGATTTTGGCTTTTTGCACTATAGGTTGCTTAATTGCTAGCTTGACGGTTCCAAAATTCAAAAACTCTTATCTTTGGGGTTTGGAGAGTTGGAAATGGTGTTTGCTCTTCACGGTAACCCTCTGTGGCCTTTTGGTTTCAAGTTGGTTCACCCATTTCATAGTTTTCATGATTGAAATGAACTTCCTCTTAAGAAAGAAAGTTCTCTATTTTGTTTATGGGTTGAAAAAAAGTGTCCAGGTTACCGTTTGGTTAGCTTTGGTTCTTGTTACATGGGTGCTTTTATTCCATCATGGGCCTAGTAAATCTCAAAGATCAAAAGCTGCTAATGTGATTTTAGATGATATAACATGGACTTTAGTATCATTCTTAGTTGGGGCAATTTTATGGTTGTTTAAAACCCTTTTGCTCAAAATCTTAGCATCAAATTTCCATATGAACCAGTATTTCGATAGAATCCATGAAGCTATCTTTCATCAGTATGTTCTGCATACCCTCTCTGGCCCACCTCTTATTGAAGAGGCAGAGAGGATAGGGAGGTCGGGTAGTAGTGGTCATTTGAGGCTCATAAGTAAGAATAAGAATAAAGGTGGGAAGATTGATATGGGAAAGCTTCATAGGATGAAGAGAGAAAAGGTCTCGGCTTGGACTATGAAAGTCTTAGTTGATGCGGTTATGAGTTCGGAGTTGTCTACGATTTCTAATGCGTTGGATGAAAGTATTGGAGATGGAGAAGGGAAAAGAGATAGTGAGATCACTAGTGAGATGGAAGCAATTGCAGCTGCTTATAAAATTTTCAAGAATGTTGCTCATCATGCTAACAACCATATTGAGGAAGATGATCTATTGAGGTTCATGATTAAGGAAGAAGTGGATCTTGTATTTCCGCTACTTGAAGGAGCCGAAAAACGACTAATCAACAAAAAGTCTCTTACCAATTGGGTGGTGAAGGTATACCAGGGTCGGAAAATGCTAGCACATTCTCTAAACGACACGAAAACGGCCGTAAAGCAACTGAACAAGCTTGTGACGGGGATTGTGATTATAGTGACAATTATCATCTGGCTTTTGTTAATGGAAATTGCGACTACAAAAGTACTTATTCTCCTAAGTTCTCAACTTGTGGTTGCTGCTTTCGTGTTTGGGAACACTTGTAAGACCATTTTTGAAGCCCTTATTTTTGTTTTTGTCATGCATCCATTCGATGTTGGGGATCGATGCGTCGTTGACGGCGTTCAGATGATGGTTGAAGAGATGAACATATTAACGACAGTGTTCTTGAAGCTGAACAATGAAAAGGTTTACTACCCAAACTCCGTTTTGGCTACAAAGCCGATTGGTAATTACTATCGAAGCCCTGATATGAGTGACACGGTTGAATTTTCGATTGGATTTATCACGCCATTGGAGCGGATTGGAGCTCTGAAGGAGAAAATCAAGAGGTATTTGGAGGAAAATTCTCCGCAGTGGCATCCGAACCATAGTGTGGTGGTGAAGGAGATTGAAGAAGTGAACAAGATAAACATTGCTCTCCATGTCAATCACACGATGAATTATCAAAACTGGCCGGAGAGGAACAAGCGGAGATCGGAGCTTGTCGTCGAGCTGAAGAAAATTTTTGAAGAGTTGAATATAAAATATGATCTCATTGCACAAACTGTCCATCTACATCACGTCGAGTAA 2154 41.23 MGGGVHEKPPRTGDIVRNSENKTSDASDDVVLEISRDTTNGSPPSTAGFTTPVVGSSASPENSSNKPPKIPPKLSEPPALLKRSIYSKPKSRFGEQPVRIDSKVFEEKLNPILREQIAPPAPSADQKDEEDEEAEIFKKVELNRVKRQRVKFKTLVQLILAFCTIGCLIASLTVPKFKNSYLWGLESWKWCLLFTVTLCGLLVSSWFTHFIVFMIEMNFLLRKKVLYFVYGLKKSVQVTVWLALVLVTWVLLFHHGPSKSQRSKAANVILDDITWTLVSFLVGAILWLFKTLLLKILASNFHMNQYFDRIHEAIFHQYVLHTLSGPPLIEEAERIGRSGSSGHLRLISKNKNKGGKIDMGKLHRMKREKVSAWTMKVLVDAVMSSELSTISNALDESIGDGEGKRDSEITSEMEAIAAAYKIFKNVAHHANNHIEEDDLLRFMIKEEVDLVFPLLEGAEKRLINKKSLTNWVVKVYQGRKMLAHSLNDTKTAVKQLNKLVTGIVIIVTIIIWLLLMEIATTKVLILLSSQLVVAAFVFGNTCKTIFEALIFVFVMHPFDVGDRCVVDGVQMMVEEMNILTTVFLKLNNEKVYYPNSVLATKPIGNYYRSPDMSDTVEFSIGFITPLERIGALKEKIKRYLEENSPQWHPNHSVVVKEIEEVNKINIALHVNHTMNYQNWPERNKRRSELVVELKKIFEELNIKYDLIAQTVHLHHVE 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12597498 12600678 + Conep04aG0174700.1 Cone4ag1693 436671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1693 717 Pfam Mechanosensitive ion channel, beta-domain 550 607 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone4ag1693 717 MobiDBLite consensus disorder prediction 33 64 - -
Cone4ag1693 717 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 45 715 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cone4ag1693 717 MobiDBLite consensus disorder prediction 1 79 - -
Cone4ag1693 717 FunFam Predicted mechanosensitive ion channel 557 606 - -
Cone4ag1693 717 PIRSF Memb_At2g17000 3 716 IPR016688 -
Cone4ag1693 717 Gene3D - 557 606 IPR023408 -
Cone4ag1693 717 SUPERFAMILY Sm-like ribonucleoproteins 547 606 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1110 Cone-Chr11:8653799 Cone4ag1693 Cone-Chr4:12597498 1.75E-298 dispersed
Cone18ag0468 Cone-Chr18:2270743 Cone4ag1693 Cone-Chr4:12597498 4.31E-307 dispersed
Cone4ag0813 Cone-Chr4:5172087 Cone4ag1693 Cone-Chr4:12597498 7.73E-213 dispersed
Cone4ag1693 Cone-Chr4:12597498 Cone8ag1305 Cone-Chr8:10642036 5.00E-152 dispersed
Cone4ag1693 Cone-Chr4:12597498 Cone7ag0765 Cone-Chr7:4764957 7.44E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1693 K22048 - cit:102612048 806.979